BAC Information

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BAC

Clone NameMSMg01-063G04
Chromosome3 (Build37)
Map Location 30,961,446 - 31,118,210
singlet/doubletdoublet
Overlap geneSkil, Cldn11, Slc7a14
Upstream geneMds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci
Downstream geneLOC625125, Kcnmb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063G04.T7 (MSMg01no063_g04.b1)MSMg01-063G04.TJ (MSMg01no063_g04.g1)
ACCAG289138AG289139
length681691
length of high quality
(start - end)
567 (36 - 602)303 (75 - 377)
definitionCHROMAT_FILE: MSMg01no063_g04.b1 PHD_FILE: MSMg01no063_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:43 2005CHROMAT_FILE: MSMg01no063_g04.g1 PHD_FILE: MSMg01no063_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,117,808 - 31,118,210)(30,961,446 - 30,961,746)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTCT
CATGTCGCCTAACTCACTGGTACCTTTACCATGAGAGCAGCCATGTTTTC
ATTTCTAATTTATCCAGTCCCTCTGAGGAAGATGAAGTTCTGTCTTTACA
TTTAGAAGACAGGACTAGAAATTTGGACAATGTGTTTTATGCCAGGATAT
AAAAATTCTTTTCTTCCTACTGTTTGTTCATTCATTCGTTGAGGCAGTGT
CTTTAATATCCAAGATGGGCCTCAAATTCTTTATGTGGCACCAGAATAAC
CTTGAACTCCGGACCCTCCTCTCCCGACCTCTTTAGTTCTAGGATTACAA
GCATGGTGTACCACCGTGGTTGGGTCATGCAGTACTAGTGATCAATCCTG
GGGTTTTGTGCTTGGTAGGCATGCATTCACCCAAAATGAACCTCGGCCTC
AGTCCCCAAAATGTAAACACCCCCCTTGCTGGTCTTTGTGTGAGCTGCCA
TTTAAAATACTATTGGAAATAGGAAGCCACCATTGTGAGGAAGAAAGTTG
TAAGGAAGAGTGCTGGGATAGCCCAATTCTTGATGTATGTCCATCAATCA
ATCATCAATCAATCAGACTGACATGCTTCCTGGCGGAATAAGAGGAAACA
ATCAGCTTTTCAGTGTCAGACATGCTCCAGA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTGGGCTGGGGTCATGCCATTGGA
AAAGGAAGCTTTGCGCCTTGGTTCAGCATCCTTGTTTCTAGAAGCAAAAT
GAACAGCAGTGTTAATCCAGGACTTAGGGTTCTCACAGGGATGCTGTCTA
AGATAGCCTAGACCAGCAGTCTCCCTTTGGGAAACAGAACGACCCTTTCA
CAGGGGTCACCTAAGGCCATCAAAAAAACAAACAAACAAACAATGTTTAC
ATTATGATTCATAACAGTAGCAAAATTACAGTTATGAAGTAGCAACAAAA
TATATTTTATGATTGGAGGGCCACATCATGAGGAACTGTATTAAAGGGTC
TCAGTGGGGGCTGGAAAAATGGCTCAGTGGTTAAAAGTACTGACTGCTCT
TTCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACC
ATCTGTAATGGGAATCCGATGCCCTCTTTTGGCATACAGACATACATGTA
GACAGAGCACTCATACAGACAATAAATAAATCTTTAAAAAAAAAAAAAAA
AAAAAAAGGTCTCAGCATCCGGTCCAGAACCCACTCCCTCCACAGGAATG
CCTCTGTCCATGGCCTACCCTTATTGTTCTCTCCCTACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_g04.b1 MSMg01no063_g04.b1 CHROMAT_FILE:
MSMg01no063_g04.b1 PHD_FILE: MSMg01no063_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:43 2005
         (567 letters)



>mm_chr3_31117808_31118774
          Length = 967

 Score =  748 bits (387), Expect = 0.0
 Identities = 399/403 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattctcatgtcgcctaactcactggtacctttaccatgagagcagccatgtttt 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaattcattctcaggtagcctaactcactggtacctttaccatgagagcagccatgtttt 344

                                                                       
Query: 65  catttctaatttatccagtccctctgaggaagatgaagttctgtctttacatttagaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 343 catttctaatttatccagtccctctgaggaagatgaagttctgtctttacacttagaaga 284

                                                                       
Query: 125 caggactagaaatttggacaatgtgttttatgccaggatataaaaattcttttcttccta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 caggactagaaatttggacaatgtgttttatgccaggatataaaaattcttttcttccta 224

                                                                       
Query: 185 ctgtttgttcattcattcgttgaggcagtgtctttaatatccaagatgggcctcaaattc 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 223 ctgtttgttcattcattcgttgaggcagtgtctttaatatccaagacgggcctcaaattc 164

                                                                       
Query: 245 tttatgtggcaccagaataaccttgaactccggaccctcctctcccgacctctttagttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tttatgtggcaccagaataaccttgaactccggaccctcctctcccgacctctttagttc 104

                                                                       
Query: 305 taggattacaagcatggtgtaccaccgtggttgggtcatgcagtactagtgatcaatcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 taggattacaagcatggtgtaccaccgtggttgggtcatgcagtactagtgatcaatcct 44

                                                      
Query: 365 ggggttttgtgcttggtaggcatgcattcacccaaaatgaacc 407
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  ggggttttgtgcttggtaggcatgcattcacccaaaatgaacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no063_g04.g1 MSMg01no063_g04.g1 CHROMAT_FILE:
MSMg01no063_g04.g1 PHD_FILE: MSMg01no063_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:43 2005
         (303 letters)



>mm_chr3_30961246_30961948
          Length = 703

 Score =  567 bits (293), Expect = e-166
 Identities = 299/301 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctgggctggggtcatgccattggaaaaggaagctttgcgccttggttcagcatccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctgggctggggtcatgccattggaaaaggaagctttgcgccttggttcagcatccttg 260

                                                                       
Query: 61  tttctagaagcaaaatgaacagcagtgttaatccaggacttagggttctcacagggatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctagaagcaaaatgaacagcagtgttaatccaggacttagggttctcacagggatgc 320

                                                                       
Query: 121 tgtctaagatagcctagaccagcagtctccctttgggaaacagaacgaccctttcacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctaagatagcctagaccagcagtctccctttgggaaacagaacgaccctttcacagg 380

                                                                       
Query: 181 ggtcacctaaggccatcaaaaaaacaaacaaacaaacaatgtttacattatgattcataa 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 381 ggtcacctaaggccatcaaaaaaacaaacaaacaaacagtgtttacattatgactcataa 440

                                                                       
Query: 241 cagtagcaaaattacagttatgaagtagcaacaaaatatattttatgattggagggccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtagcaaaattacagttatgaagtagcaacaaaatatattttatgattggagggccac 500

            
Query: 301 a 301
           |
Sbjct: 501 a 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)