BAC Information

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BAC

Clone NameMSMg01-063G06
Chromosome3 (Build37)
Map Location 60,019,135 - 60,166,040
singlet/doubletdoublet
Overlap geneLOC669823
Upstream geneP2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
Downstream geneLOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063G06.T7 (MSMg01no063_g06.b1)MSMg01-063G06.TJ (MSMg01no063_g06.g1)
ACCAG289142AG289143
length748680
length of high quality
(start - end)		248 (126 - 373)436 (56 - 491)
definitionCHROMAT_FILE: MSMg01no063_g06.b1 PHD_FILE: MSMg01no063_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:43 2005CHROMAT_FILE: MSMg01no063_g06.g1 PHD_FILE: MSMg01no063_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,165,797 - 60,166,040)(60,019,135 - 60,019,568)
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCCCCNCCCCCCCTTTTT
GTTTACCTCTATAATTGCGGCGCTAATAGACTCCTAAATCATGAGGACCG
CGGAATTCATTGTTTTGCAATAAAAAATATGTTTAAAATTTAAATTCATT
TCTGTAATATTGTTCATAATATCTTTTTACTCTATGTCTTGTGCAATGGT
TAATATTGGTTTCTTTAAGCCTCCACTTCTTACTTCTCTCTAGGCCTTCT
ACCCTCTATCTTCATCATTAAACTTTGAACTTCTGTGAAAAAGTAGTCAT
TTATTTTGGTGTAAAAAATCATTTGATGTATCTTTATTCTCAATTTTACT
TACAGAGTTATAGCTGCTCTTTGATTATTAAAGCTTTTCTGNAAGGGTTC
AGTTGGTAAGGAATAAGATAAACAGACCACACAGTCCTCTTGCCTCCACC
TCCTGAGAATTGATATTTTAGGTTTGCTATCTTGCTTCCTTAATGAAACA
CTTTTGGTAGAAGAATGAACTAAGATAGATTCTATTACCAATTAGGTCCA
GGTACCTTCACCTAAATTCCAGAGGGGCACCCAAAATCTATACCCACATG
AGCAAAATATTCAGAGAGTATGTTCAATCATAATATGATTGGCACTCCTT
GAGAAGAAAATTCTATGCCCTATAATCCCAAACCTAGTTTTAAGCACTGA
CCCCATTGTCATTTATTATAGCTGCTTGCAATCCTACGCTAATTATGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACAGAATTCAGGTCTTGGGACATTTTTTATTGGTAAATTTTTATTA
CTGCATCAAACTCTCTGCTGATGGCAGACCTTTTAGATTACGTATTTTGT
GTTAGTTGAATTTTGCAGGTCATAGAAATCCAGAAATTCATTTTCTTACA
TTTTAAAATTTAGGAGTAAATAGGTTTTAAGGCATGTCCTGGTGTTTATC
TGAATTACCATGATATTTGTCATAATGCCTCCACCTTCATTTCTATTTTT
ATTTTTAAAAGTAAATATTAATAATTTTAATAATTTTAGTAAATTCATTA
AAAATTCATGTTATAAGCATTTCTATATAATGAAGTAGAACCTCAGATAT
TAATTCTTTAATATAACCAATTGTATTAAAATTCATATTTAGAGCACTCA
GATATAATAATAGTTCCTAGCAGAGAAGGGGACAAATTATAATAAAAGAG
GAATAAGCCAAGAAAATGAAAGAATACAAAGAACCTCCAAAGGCAGTTTT
AAAATCAAGAATTCAGGGGAAGGAATACTCACAAACTGACCATGAATGAG
AGCTTAGATATAACAAAAAGCAACTCAGAATCTTAAATGATAACCCCAAC
CCCCCAATTTTAAATAAACTTAATCTGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_g06.b1 MSMg01no063_g06.b1 CHROMAT_FILE:
MSMg01no063_g06.b1 PHD_FILE: MSMg01no063_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:43 2005
         (248 letters)



>mm_chr3_60165597_60166244
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatgtttaaaatttaaattcatttctgtaatattgttcataatatctttttactctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatatgtttaaaatttaaattcatttctgtaatattgttcataatatctttttactctat 385

                                                                       
Query: 61  gtcttgtgcaatggttaatattggtttctttaagcctccacttcttacttctctctaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtcttgtgcaatggttaatattggtttctttaagcctccacttcttacttctctctaggc 325

                                                                       
Query: 121 cttctaccctctatcttcatcattaaactttgaacttctgtgaaaaagtagtcatttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttctaccctctatcttcatcattaaactttgaacttctgtgaaaaagtagtcatttatt 265

                                                                       
Query: 181 ttggtgtaaaaaatcatttgatgtatctttattctcaattttacttacagagttatagct 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttggtgtaagaaatcatttgatgtatctttattctcaattttacttacagagttatagct 205

               
Query: 241 gctc 244
           ||||
Sbjct: 204 gctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no063_g06.g1 MSMg01no063_g06.g1 CHROMAT_FILE:
MSMg01no063_g06.g1 PHD_FILE: MSMg01no063_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:43 2005
         (436 letters)



>mm_chr3_60018935_60019770
          Length = 836

 Score =  808 bits (418), Expect = 0.0
 Identities = 430/434 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaattcaggtcttgggacattttttattggtaaatttttattactgcatcaaactctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaattcaggtcttgggacattttttattggtaaatttttattactgcatcaaactctc 260

                                                                       
Query: 61  tgctgatggcagaccttttagattacgtattttgtgttagttgaattttgcaggtcatag 120
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 261 tgctgatggcagaccttttagattacgtatttcgtgttagttgaattttgcaggtcatgg 320

                                                                       
Query: 121 aaatccagaaattcattttcttacattttaaaatttaggagtaaataggttttaaggcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatccagaaattcattttcttacattttaaaatttaggagtaaataggttttaaggcat 380

                                                                       
Query: 181 gtcctggtgtttatctgaattaccatgatatttgtcataatgcctccaccttcatttcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcctggtgtttatctgaattaccatgatatttgtcataatgcctccaccttcatttcta 440

                                                                       
Query: 241 tttttatttttaaaagtaaatattaataattttaataattttagtaaattcattaaaaat 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttatttttacaagtaaatattaataattttaataattttagtaaattcattaaaaat 500

                                                                       
Query: 301 tcatgttataagcatttctatataatgaagtagaacctcagatattaattctttaatata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatgttataagcatttctatataatgaagtagaacctcagatattaattctttaatata 560

                                                                       
Query: 361 accaattgtattaaaattcatatttagagcactcagatataataatagttcctagcagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 accaattgtattaaaattcatatttagagcactcagatataataatagttcctagtagag 620

                         
Query: 421 aaggggacaaatta 434
           ||||||||||||||
Sbjct: 621 aaggggacaaatta 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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