BAC Information

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BAC

Clone NameMSMg01-063J23
Chromosome3 (Build37)
Map Location 51,154,952 - 51,155,235
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc7a11, EG621304, LOC100039667, Ccrn4l, Elf2
Downstream geneA630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063J23.T7 (MSMg01no063_j23.b1)MSMg01-063J23.TJ (MSMg01no063_j23.g1)
ACCAG289315AG289316
length692685
length of high quality
(start - end)
289 (60 - 348)285 (59 - 343)
definitionCHROMAT_FILE: MSMg01no063_j23.b1 PHD_FILE: MSMg01no063_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:03 2005CHROMAT_FILE: MSMg01no063_j23.g1 PHD_FILE: MSMg01no063_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTT
GTCACTGATTCTCAACCTTCCTAATGCTGTGACCCTTAAATACATTTCCT
CATGCTGTAGTGACCCCCAACCATAAAATATTCTCATTGCTACTTCTTAA
CCGTAATTTTGTTATTGTCATGCATTGTACTGTAAATAACTGTGTTTTCT
TTTTTTTTGGTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT
GGAACTCACTTTGTAGACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGC
CTCTGCCTCCCGAGTGCTTGGATTAAAGGCTTACGCCACTACACCCATTA
TATCTGCGTTTTCTGATGGCCTTAGTTGACCCCAGGGAAAGGGTCTCTCA
ACCCCAAATGGGGTTGCAACCCACAGGCAGAGAACCACTGTATTAGAAGA
CCAGGCTGGCCTCAGACTCAGAGATCCGCCTACCCCTGTCTCCCAAGTGC
TGGGATTGAAGGCAGAAGCAGGTCAACTTCAGTGAGTTAGAACCCAACTG
TGGTGCAAAGAGGGTTCCAGGACAGCCAGGGCTGCAGAGCACAGGAGGAT
GGTCTCTACATTTATTCATTAATTAACATATCCAGAAAAGCAAAAGCCTA
GCAAAACAAAAAGTCCGACACAGCGCCCATACTCTTACAGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCTGATGAGAGACTTGTGAACCTCTCTCTCCCAATAAGGAATG
TCGTGAGCTCCTTAACACTGACCCAGGCTTCCCTGTCTCCCTTGATGTGC
TTATTTCTCTGCCAGGATTGCAAGGCGGTTCTTCTACTCCAGGATGACAA
TGGGATGGCCATGTTATGCCTACAGGGAAAAGCTGTGCTAGCATAATTTC
TTGCACAGACTTCAGGAATGTGTAAGTCGACAGAGCTCTCCACTCACCGT
GGTTAAAATGCCTTCCTTTACAAAGTTTGTGAAATCACTTGTTTCTTGAG
TACATAGATTTCAAGGGCCCACCTCTATTCCATCCCTAAAGCCATCAGTT
TGGGAGGCCCTGAAATTTACATTTACTGATTTGAGACTCACCTGTCCCCC
AAGGGTTCTCTGGGTTACTCTCCTGTGACGTGCTGTCATATCTCCCTTGA
GTTGGTTGATCAGGCTGGTTCCCATTCTTCCCAACCTGAAAATACCTCAT
TCACAGCTGTATTACAGAGTTTTTGCAGACTGTTGCAATAGAGCCTGTGA
CTGGAAAGTATAGACTGGAAGGCCTTCTGTACCTATGCGTCATAAACAGA
GAACGTTTCACAAAACCTACCTCATTACACCCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_j23.g1 MSMg01no063_j23.g1 CHROMAT_FILE:
MSMg01no063_j23.g1 PHD_FILE: MSMg01no063_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:03 2005
         (285 letters)



>mm_chr3_51154752_51155437
          Length = 686

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%), Gaps = 1/284 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatgagagacttgtgaacctctctctccc-aataaggaatgtcgtgagctccttaaca 59
           ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 201 ctgatgagagacttgtgaacctctctctcccaaataaggaatgtcatgagctccttaaca 260

                                                                       
Query: 60  ctgacccaggcttccctgtctcccttgatgtgcttatttctctgccaggattgcaaggcg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgacccaggcttccctgtctcccttgatgtgcttatttctctgccaggattgcaaggcg 320

                                                                       
Query: 120 gttcttctactccaggatgacaatgggatggccatgttatgcctacagggaaaagctgtg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcttctactccaggatgacaatgggatggccatgttatgcctacagggaaaagctgtg 380

                                                                       
Query: 180 ctagcataatttcttgcacagacttcaggaatgtgtaagtcgacagagctctccactcac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagcataatttcttgcacagacttcaggaatgtgtaagtcgacagagctctccactcac 440

                                                       
Query: 240 cgtggttaaaatgccttcctttacaaagtttgtgaaatcacttg 283
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtggttaaaatgccttcctttacaaagtttgtgaaatcacttg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 686
Length adjustment: 9
Effective length of query: 276
Effective length of database: 677
Effective search space:   186852
Effective search space used:   186852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)