Query= MSMg01no064_a02.b1 MSMg01no064_a02.b1 CHROMAT_FILE:
MSMg01no064_a02.b1 PHD_FILE: MSMg01no064_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:35 2005
(423 letters)
>mm_chr3_23942405_23943224
Length = 820
Score = 613 bits (317), Expect = e-180
Identities = 394/443 (88%), Gaps = 39/443 (8%)
Strand = Plus / Minus
Query: 16 gaattc-tatatactcaataatatcagaagctgccttgatatgaacataatactagggta 74
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 472 gaattcatatatactcaataatatcagaagctgccttgatatgaacataatactattgta 413
Query: 75 gtggtttcacatgtccacatggcccagaccccttctgatggactagtaggaaaaatacca 134
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 412 gtgatttcacatgtccacatggcccagattccttctgatggactagtaggaaaaatacca 353
Query: 135 atttactaatttttatggaagcaatgatcacagaatcctgaaagttgtgtttattattct 194
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 352 atttactaatttttatggaagcaatgatcacagaattctgaaagttgtgtttataattct 293
Query: 195 ttaggggaaaatgtgacttgttttaattactaaatctattaaattgggtaaaggtatttg 254
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttaggggaaaatgt----tgttttaattactaaatctattaaattgggtaaaggtatttg 237
Query: 255 agtttgttcaactatctaatat----------------gtgtgtgagtgtgtgtgtgtgt 298
|||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 236 agtttgttcaactatctaatatatgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgt 177
Query: 299 ctgt------------------gtgtgtgtgtgtataatacctccttttttatataggca 340
|||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ctgtctgtctgtctgtctgtctgtgtgtgtgtgtataatacctccttttttatataggca 117
Query: 341 tcactaagttgtcaatattttttctttgtctttgatttataaaatattattttatgtgta 400
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tcactaagttgtcaatgttttttctttgtctttgatttataaaatattattttatgtgta 57
Query: 401 tggaagtattgctgttatatatg 423
||||||||||||| |||||||||
Sbjct: 56 tggaagtattgctattatatatg 34
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 820
Length adjustment: 9
Effective length of query: 414
Effective length of database: 811
Effective search space: 335754
Effective search space used: 335754
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_a02.g1 MSMg01no064_a02.g1 CHROMAT_FILE:
MSMg01no064_a02.g1 PHD_FILE: MSMg01no064_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:35 2005
(264 letters)
>mm_chr3_23787057_23787721
Length = 665
Score = 402 bits (208), Expect = e-117
Identities = 253/276 (91%), Gaps = 17/276 (6%)
Strand = Plus / Plus
Query: 1 actataaaaatatatttaagagaatacttgagatacatgtatatgtgcataggcttgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 actataaaaatatatttaagagaatacttgagatacatgtatatgtgtataggcttgtgc 260
Query: 61 agtttaaatttgaacactaaaaatatacaggtatacatataagtgatttatataaatatc 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 agtttaaatttgaacactaaaaatatacaggtatacatataaatgatttatataaatatc 320
Query: 121 ttacatatatgtgcatatactttaaaa-tctgaacttatacaaatacttacacac----- 174
||||||||||||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct: 321 ttacatatatgtgcatatactttaaaaatctgaaattatacaaatac--acacacgtata 378
Query: 175 -----atatatatgtatatatgtgtatatgtatatatat--gtatatatatat--tcttc 225
|||||||| ||||||| | ||||||||||||||| |||||||||||| |||||
Sbjct: 379 tatttatatatatttatatatatttatatgtatatatatatgtatatatatatattcttc 438
Query: 226 tgcatatttgtggtaatcttttaaaatctatacatg 261
||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgcatatttgtggtaatcttttaaaatctatacatg 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 665
Length adjustment: 9
Effective length of query: 255
Effective length of database: 656
Effective search space: 167280
Effective search space used: 167280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
