BAC Information

Click to search

BAC

Clone NameMSMg01-064A10
Chromosome3 (Build37)
Map Location 114,033,143 - 114,033,557
singlet/doubletsinglet
Overlap genenone
Upstream geneAmy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064A10.T7 (MSMg01no064_a10.b1)MSMg01-064A10.TJ (MSMg01no064_a10.g1)
ACCAG289612AG289613
length1,2401,210
length of high quality
(start - end)
429 (29 - 457)264 (192 - 455)
definitionCHROMAT_FILE: MSMg01no064_a10.b1 PHD_FILE: MSMg01no064_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:38 2005CHROMAT_FILE: MSMg01no064_a10.g1 PHD_FILE: MSMg01no064_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAAGCATTGGGGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
TTACTTGAAAAATAAATTTTAAATCAACATTTTGTATTTCGTGAAAAATT
TGAAGCATAAATTGAAAGTTGCTTTCCCATAATTACTCAGTAATGGGCTA
TTTCCTTTCATCTATGAATACAAAGAAGTTTTATAGACTATGTGCTTTAG
TCGTAGAGTCAAGAATAAATTAAATTTTATAAGCAGTATTTATTTTATGG
CAATAAAAACAATCAGAAATGGAATATGTGTTATAAAGGCATAAGGTAAA
GATAACATGAAGGGCAGGTCATTTTATGAAGAGCTTATGAATTTATCAGA
ACACAAATCACACATAGAAAGGACTTCTGTATTTAAAATGTCTTTCTATA
CATTATATCATAACTTGAAAAAGTTTATCATTCTGTATATTTGAAAAAGT
ATGAGATTCCCTAACAAATGGATATTATAGCATAATTCATAAGTATATTT
ATGAAACTCATATTGAGTACTGCTATGGATTGACTGTGTCTCCTGTGAAG
GTCATGTTGTACCTTCCTACCCAAAACAGTATCGTTACAGGATACCACAT
TTTTGGCCCTTAATAGGCCATGAAGACTATTCTCCTATGGAAGAGATTGA
GGTTGTTATTAGAGAGGTTTACCCCAGCATCTGCTCTGTCTTTTCTGTTT
ATTCTCTTATTTTCTCCTATATCGGAACATGACTTTCTCCAGAGGACATA
GCAACAAAGTTCCATATGGGAAGCACACCAAACCTCTCTGGATATCCAAG
CCTTGATCTTAAATTTTCCCATTTGACTGAGTTGTTCCAAACATATTGCT
ATTGCTCATGAATTACTCCAGGAGGGGCTTTTTTTATTATTACCCCGGGG
AAACTAGAACAGGAAGTCCCCCACCCAACTTTTCCCAAACAAGGCTTTTG
ATAAACTTTTTTTTTAAATTTTTACCCCCCAAATTTTTCTTTTGTACCAA
TATTGGGGGGTTATTTTCAAAACCCCGGACTCCTTAAATATTTTTTTTTC
TTTCCCACCGGGTATGATAAACCCTTATTTCATACCCTTTTTTTTCTTTT
TTCGATAGGTAATTACCTAATAAATTTCTTCATTCAGTCACCTTTCTTTT
CACCTATAAACTTTATCTATCTCTTGNTCCCAATCAATGACTTCTGTCTA
CATATTTTTCTCTTTATTCTATACTTTTACTCCATTCTTT
NNCCGAAGACGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGC
ACCTGAAAAAATGTTCAGGATCCTCCACCATCAGGGAAATACAAATCAAA
ACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGAACAAAAC
TTTAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGTTGGGATTACAAGCTTGTACAACCACTCGAGAAATCAGTC
TGGCAGTTCCTCAGAAAATTGGACATAGTACTACAGGAGGATCCCACAAT
ACCTCTCCTGGGCATATATCCAGAGGATGTTCCAACTGGTAAGGAGGACA
CATGCTCATCTATGTTCATAGCAGCCTTATTTGTAATAGTCAGAAGCTGG
AATTATTCCCCATCCCCCTCAACAGAGGAATGGATACGGAAAATGAGGTA
CATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATGCCCAGGCAAATGGATGGACCTGGATGGCATCATCCTGAGTGAAGTA
ACCCAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGATA
TTAGACCAGAAACTTAGGATACCCAAGATATAAGATACAACTTGCCAAAC
GCATGAAATTCAAGAACAATGAAGACCAAAATGTGGACACTTTACCCTTT
CTTAGAAATGGGAACAAAACACCCATAGAAGGAGTTACAGAGACGAAATT
TGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTGTCATATGCAGGGA
TCCATCCCATAACCAGCTTCCAAATGCTGACACCATTGCATACACTAGCA
AGATTTTGCTGAAAGGACCCAAAAAAATTCTTCTCTGTGAAAAAATGCCG
GGGCCCTAAAAAAACAAAAGGGATGACCCCCGTCCGCTTTTGTATGGGGC
CCCAGCCCCCCCTGGGGGAGTTAAGAAAATTACCCCGGGAGGTGAAAAAA
ATTGCAACCCTGTATTTGGAAAACCATTGTATTATACCCTCCCCGGGAAT
TCTTGGTTTTTTCTTGTATGTGTCAAAAAAAAGGCCAACCGCCTCTTCTT
GCATAAAGGACCCTTGGTTTTTAAATTTTTTTTTCCCCTCTCGGGGGAGA
TCAGTGGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_a10.b1 MSMg01no064_a10.b1 CHROMAT_FILE:
MSMg01no064_a10.b1 PHD_FILE: MSMg01no064_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:38 2005
         (429 letters)



>mm_chr3_114032928_114033757
          Length = 830

 Score =  787 bits (407), Expect = 0.0
 Identities = 413/415 (99%), Gaps = 1/415 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattctttacttgaaaaataaattttaaatcaacattttgtatttcgtgaaaaatttga 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaattctttacttgaaaaataaattttaaatcaacattttgtatttcgtgaaaaatttga 571

                                                                       
Query: 76  agcataaattgaaagttgctttc-ccataattactcagtaatgggctatttcctttcatc 134
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 570 agcataaattgaaagttgctttcaacataattactcagtaatgggctatttcctttcatc 511

                                                                       
Query: 135 tatgaatacaaagaagttttatagactatgtgctttagtcgtagagtcaagaataaatta 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tatgaatacaaagaagttttatagactatgtgctttagtcgtagagtcaagaataaatta 451

                                                                       
Query: 195 aattttataagcagtatttattttatggcaataaaaacaatcagaaatggaatatgtgtt 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aattttataagcagtatttattttatggcaataaaaacaatcagaaatggaatatgtgtt 391

                                                                       
Query: 255 ataaaggcataaggtaaagataacatgaagggcaggtcattttatgaagagcttatgaat 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ataaaggcataaggtaaagataacatgaagggcaggtcattttatgaagagcttatgaat 331

                                                                       
Query: 315 ttatcagaacacaaatcacacatagaaaggacttctgtatttaaaatgtctttctataca 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttatcagaacacaaatcacacatagaaaggacttctgtatttaaaatgtctttctataca 271

                                                                  
Query: 375 ttatatcataacttgaaaaagtttatcattctgtatatttgaaaaagtatgagat 429
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttatatcataacttgaaaaagtttatcattctgtatatttgaaaaagtatgagat 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 830
Length adjustment: 9
Effective length of query: 420
Effective length of database: 821
Effective search space:   344820
Effective search space used:   344820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)