BAC Information

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BAC

Clone NameMSMg01-064B17
Chromosome3 (Build37)
Map Location 83,759,229 - 83,759,478
singlet/doubletsinglet
Overlap geneD930015E06Rik
Upstream geneFgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2
Downstream geneMnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064B17.T7 (MSMg01no064_b17.b1)MSMg01-064B17.TJ (MSMg01no064_b17.g1)
ACCAG289673AG289674
length1,193733
length of high quality
(start - end)
319 (132 - 450)239 (72 - 310)
definitionCHROMAT_FILE: MSMg01no064_b17.b1 PHD_FILE: MSMg01no064_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:46 2005CHROMAT_FILE: MSMg01no064_b17.g1 PHD_FILE: MSMg01no064_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGAGCACTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCC
ATAATTACTTCTTCGGCTTAAATTTTGTAGGATTTTACTTCTAAAATTAT
ATACTTCTAGTATATAATAAGCCCCGCCAAACATTTTAAGATTTTTTTTT
TTCCTAGCCATGACTGAGATAAAAGACCGTGAAATACATGACTTCTGAAA
AACGCCTTCAGATGTCTGAACTGAACATCAGTGCTGCTTTCTGACAAGGA
CCAGTTCTGTCAACAAACTTCAAAACCTACTCAGCAAAAGAGTCGGGGTA
CTGCAGAGTGTATTCACAGCCCACGTACTAACTGGACCACTCAAGAACTA
TCTACTGACTGGTGGACAGATTGACTGACTTTGACTATCTACTGACTGAT
GGACAAACTGACTGACTTTGGAGAGAGCTACATCCAAGAGGGTCTGACTT
TTTTGACCCCCACCCCCCCCCTGTACAGAGAAAAGCAAAGAAGAAACCTA
CAGCCCAGAGAGGAGAAATGACGACAAAGGGCATGAGGACCACTCAGTGT
GGGAGCACTGCCTTTAAGGAGGATCACATGGTGTGGGAGCACTGCCTTTA
AGGAGGATCACATGGTGTGGGAGCACTGCCTTTAAGGAGGATCACATGGT
GTGGGAGCACTGCCTTTAAGGAGGATCACATGGTGTGGGAGCACTGCCTT
TAAGGAGGATCACATGGTGTGGGAGCACTGCCTTTCGGCAGATGGAATGT
GCACCTGAGCACATCATACAAAAGAATGAGCACGAAGTCTTCCTCACACC
ACTCACAAGACTGAAGTCAAACTGGGCAGGAACAAAGATAAACTGCCAAA
TCCTAATACATAAAAGTGTCATCATCTTCGAGAAACTTTAAAAGAGATAC
TAAAACTGTAACTAACCAAAGGTGAAAAAGGGATAAACGGGGATTTTTTC
AAAAACTGGAATCTTTTGTACTTCCAAGGAACCTATCTATAAAAAAACGG
CTTCCAAGGGCCCTTGGTAAAACCTGAACTTTGGATTAAAAACCGGCTCC
TCTTTCAAAAAAATTTCCTCGTTTTCAATAAAAAAGCCAAAATTTTTTTT
TTAATATAATGTGCTTTGTGTTTTTTTACTTGTTCTTCTCACCTCCTCAC
ACTCAAAACTTTTTCCAACTTATATAAAGTTGTTTTGTGAGAT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCTTGCACTTGCGCATAAGGCTTGTTT
ACTAGTTAGGTGCAGTGGAAGCCAGTGCCATCTTATAATGGCGATTGCTC
ATGGCATGGCTCTCCACATCTCCCCCTTTTTATTTTATTAAAATTTGAGG
CTGGTCTAGGCCTCTGCAGTCATGTCCATCTGCTGTGGCTCCTGTCTTAG
GTCATTCCTCCAATGTCACAGCCTTTCCTGTCATAGGGTAACCCTATCGC
CACTGGGTCCTGTTTTTTAGGTTGGTCTGTACATGAGGAAAGTTGCTCGT
CNCGTANACCCAAGACCTGTGCCACATTAATTGCTAAATGACCTAGGGTG
AACTCCCCCAAAAAAAAAAAAAAAAAAACATTTTAGTAAAACTCAGCGAA
GTGCAAGTGCTGAGCAATGAACGTTGAGTCTCTTACATCCCAGTGCAATG
GATCCACAAATCTGTGGGACGCAATAGCAGAGAACTCAGATGCCATTTAG
GTCTTAAGCATGGACAGCCAAATTTCAGGGGAGGCCCCTTGTTCAATGGC
TGCAAGTGCTTGAGCAATAACGACCTTGTCACGGTTTTGTTGGGTTCTGA
GCTTAAAACTAACCAGAGCATANACCCTAGTCCCCAGCAGATGGCAGCAG
CAAATAAAACTACCCCCACCCATTCCTTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_b17.b1 MSMg01no064_b17.b1 CHROMAT_FILE:
MSMg01no064_b17.b1 PHD_FILE: MSMg01no064_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:46 2005
         (319 letters)



>mm_chr3_83759027_83759745
          Length = 719

 Score =  406 bits (210), Expect = e-118
 Identities = 241/252 (95%), Gaps = 2/252 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattttaagatttttttttttcctagccatgactgagataaaagaccgtgaaatacatga 60
           |||||| |||  |||||||||||||||||||||  |||||| |||||||||||||| |||
Sbjct: 203 cattttgaga--tttttttttcctagccatgacaaagataagagaccgtgaaatacgtga 260

                                                                       
Query: 61  cttctgaaaaacgccttcagatgtctgaactgaacatcagtgctgctttctgacaaggac 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 cttctgaaaaacgccttcagatgtctgaacttaacatcagtgctgctttctgacaaggac 320

                                                                       
Query: 121 cagttctgtcaacaaacttcaaaacctactcagcaaaagagtcggggtactgcagagtgt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttctgtcaacaaacttcaaatcctactcagcaaaagagtcggggtactgcagagtgt 380

                                                                       
Query: 181 attcacagcccacgtactaactggaccactcaagaactatctactgactggtggacagat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 381 attcacagcccacgtactaactggaccactcaagaactatctactgactgatggacagac 440

                       
Query: 241 tgactgactttg 252
           ||||||||||||
Sbjct: 441 tgactgactttg 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)