BAC Information

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BAC

Clone NameMSMg01-064C18
Chromosome3 (Build37)
Map Location 45,774,690 - 45,775,110
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064C18.T7 (MSMg01no064_c18.b1)MSMg01-064C18.TJ (MSMg01no064_c18.g1)
ACCAG289721AG289722
length1,2481,229
length of high quality
(start - end)
426 (30 - 455)375 (69 - 443)
definitionCHROMAT_FILE: MSMg01no064_c18.b1 PHD_FILE: MSMg01no064_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:54 2005CHROMAT_FILE: MSMg01no064_c18.g1 PHD_FILE: MSMg01no064_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGAAGCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCTTGCCTTCTAACTCTGGGTTAAATGAAAAGACTCCCAAGGAAAAACCA
GGCATTATGATAAAAAATTACAAAGCATACCGCCACCAAAAAAGAGAAGC
CTGCATTTGGTTTTCAGTAGGAAGCAAGAAGGAAAAGGAAACAATAGAAA
ATAATTTACTGCAGACAGGTTTATCAAGCCAATTTTGTACTGTAGACTAC
ACCACATAAAACAAATTTCTCTAGTAATTAAGTTATCCTCTTCACTCATG
ACTAGTAGTGATAAAGAGCATTATGCCCAGAAAAGTAAAGATGAGCCTGC
CAAAATGATGTAGAGGGTAGAGAGTGCTTCTTCCTTTTACATTTAGCATA
TGATAATCCCAATGTAACAGGGCATACACACACACACACACACACACACA
CACATTTTTTTTTCCCCCCCCCCACACATAATATATGTTTTGAAAAAAAA
AGATATATAAAGTTAATCTTAACAAAAAATGTGTATGTCACATTCCATAT
GATAAAGTGATCAAATAAAGGGGTAAGAGAACAACATGGATTCATAAATT
GAGATAGCCATATTAAATATATAACGGTTTTGTATGAAATGCATGGATGG
CCCCAAAAAAACAAAACAAAACAACAACTACAAAAAACAAGCAAACAAAA
CACAAATGACATCCTACATTTAGACCTGTCTCACAAATAAGTACCACTTG
ATACTAAAAAAATGCTTACGATATTGAATTTTTGAGAATATTAGATGAGT
GAATTTTCTTGTCCTTTTCTGAAGAAAAAATGTTTGGGTAACTCCCATAT
TCCTTGATGAACATTTAAGAGAATGTTATATATTTTGCCCTGGAGGGATT
AAATATATTTATTCCTTTACTTGAAAATATATGGATTACCGGAGTAAAAA
TGTGTTCCCTTAAGCTTTTGGTAGGCACTCTATTATAAAATAATTCCAAA
ATGTTTGTCCCAAATAAATTGTATGAAACTCCCTTTTGTGTAATTTGGAA
TTGTGTTTTATTTTTTGATATTATAAAATTCAGGAATTGGGTTTTTTTTT
CATAAAATAAATAAAACTTTTACATTGTTGGAAAAAGGAAAGTTATTTTT
TCCTCTCAATACTCTAGCTATTCTTTTGTGGTGTAATTAGCACAAATCTT
TATATTTTCTTCTTATATATTTCTTGTTTTCTTTTTTTAACTTTTTAT
NNNGGGGGCATGGAGCTGGGGCCGCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTTTGGTTCTGTGTGGATGCTCGGACATGCT
TGCTGACAGAAGCCTGATATGGCTGCCCCCTGAGAGGCTTTGCCAGAGCA
TGACAAATACAGAGGAGGACGCTTGCAGCCAACCATTGGAATGAGCTCAG
GGGTCTCCAGTGCAGGAGTTGGAGAAGGGACTGATGGAGCCGAGGGGTTT
TGCAGACCCATGGAGGGAAGAAGAGTGTCAACAGGCCAGACCCCCCCCCA
AGAGCTTCCATGGACTATACCACCATCTATAGAACACACATGGAGTGAAC
CATGGCACTGGCCACATATGTGAGAGAGAATAGCCTTGTTGGACATCAGT
GGGAGGAGAGCCCCTTGGACCTGAGGGCATTCAGGGCCTCAGGGTAGTGT
TTTTTTTCCCCCCCCCGAGGAAAGNGNNNNNNTNAAAAAAAAAAAAGGGG
GGNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGNNNNNNNNNNGGNNNGGGGGNGNNNGGNNNGGNNG
GGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGNNG
GGGGGGGNNGGGGNGGGGGGGGGGGGGGGGGNNGGGGGGGGGGGGGNGGG
NNNNGGGGGNGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGNGNGGGN
GNNGGGNGGGGGGGGGGGGGGGGGGNGGGGGGNGGGGGGGGGGGGGGGGG
GGGGGGGGGGNGGGGGGGGGNGGNGGGGGNGGGGGGNNGGGGGGGGGGGG
GGGGGGGGGGGGGGNGGGGGGNNGGGGGGGGGGGGGGGGGGNGGGGGGGG
GGGGGGGGGGGGNNGNNGGGGGGGGGGGGGGGGGGGGGNGGGGNGGGGGG
NNGGGGGGGGGGGGNGNGGGGGGGGGGGGNGGGGGGGGGGGGNGGGGGGG
GNGGGGGNGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGNGGGG
NGGGGNGGGGGGNGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGG
GGGGNGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGNGGGGGGGNGGGNG
GGGGGGGGGGGGGGGGGGGGGGGNGGGGGGNGGGGGGGGGGGGGNGGGNN
GGGGGGGNGNGNNGGGGGGGGGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_c18.b1 MSMg01no064_c18.b1 CHROMAT_FILE:
MSMg01no064_c18.b1 PHD_FILE: MSMg01no064_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:54 2005
         (426 letters)



>mm_chr3_45774473_45775298
          Length = 826

 Score =  737 bits (381), Expect = 0.0
 Identities = 405/421 (96%), Gaps = 13/421 (3%)
 Strand = Plus / Plus

                                                                       
Query: 18  gaattcttgccttctaactctgggttaaatgaaaagactcccaaggaaaaaccaggcatt 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gaattcttgccttctaactctgggttaaatgaaaagactcccaaggaaaaaccaggcatt 277

                                                                       
Query: 78  atgataaaaaattacaaagcataccgccaccaaaaaagagaagcctgcatttggttttca 137
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 278 atgataaaaaattacaaagcataatgccaccaaaaaagagaagcctgcatttggttttca 337

                                                                       
Query: 138 gtaggaagcaagaaggaaaaggaaacaatagaaaataatttactgcagacaggtttatca 197
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtaggaagcaagaaggaaaagaaaacaatagaaaataatttactgcagacaggtttatca 397

                                                                       
Query: 198 agccaattttgtactgtagactacaccacataaaacaaatttctctagtaattaagttat 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agccaattttgtactgtagactacaccacataaaacaaatttctctagtaattaagttat 457

                                                                       
Query: 258 cctcttcactcatgactagtagtgataaagagcattatgcccagaaaagtaaagatgagc 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cctcttcactcatgactagtagtgataaagagcattatgcccagaaaagtaaagatgagc 517

                                                                       
Query: 318 ctgccaaaatgatgtagagggtagagagtgcttcttccttt-------------tacatt 364
           |||||||||||||||||||||||||||||||||||||||||             ||||||
Sbjct: 518 ctgccaaaatgatgtagagggtagagagtgcttcttcctttacaattttccatttacatt 577

                                                                       
Query: 365 tagcatatgataatcccaatgtaacagggcatacacacacacacacacacacacacacac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tagcatatgataatcccaatgtaacagggcatacacacacacacacacacacacacacac 637

            
Query: 425 a 425
           |
Sbjct: 638 a 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)