BAC Information

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BAC

Clone NameMSMg01-064E23
Chromosome3 (Build37)
Map Location 96,507,102 - 96,507,623
singlet/doubletsinglet
Overlap genePias3
Upstream geneEcm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35
Downstream genePolr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064E23.T7 (MSMg01no064_e23.b1)MSMg01-064E23.TJ (MSMg01no064_e23.g1)
ACCAG289817AG289818
length1,2411,213
length of high quality
(start - end)
548 (124 - 671)63 (219 - 281)
definitionCHROMAT_FILE: MSMg01no064_e23.b1 PHD_FILE: MSMg01no064_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:09 2005CHROMAT_FILE: MSMg01no064_e23.g1 PHD_FILE: MSMg01no064_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCTNNNNNGGCACTGGGCGCATAGACTCCTAAGGGAGAGGATCCG
CGGAATTCCCTCCTGGACTGCGCCCCCTAAAAGACTGNGGGNGGNTAAGA
AGGCTGTCTCAGACCCCTTGGACAGCCATGACTTAGCTCAATTGGGGAGC
AGGGGGTCACTCACCATCCAGCCCATACCCTGGCGGGGGGCAAACCTCTG
ATGCCTCCTTCTTGGGTTTCATCGGACACCAGGATCCATCTTCCATGAAC
TGGATCTCATCACAATCCGAACAGGAATTAAGAATTTCCATGAATAAACT
AGGGAGGAGGACATGTGGATTCACGAGGCTGGACGCGGCTGGAGCCACCC
ACGGTGTTCTGACACTCACTTCCTATGCTTTAGTCACCTCATCTGCATCA
CCCACCCTCCTGGACCTCCCTGAGCTGCTGCTGGGATAGAATACAGCTGG
GACTGTAGCTCAGTAACAGAGCACCTGCAGGCTGAGTCTGATCCCTAGCA
CTGTGAGGGGAAAGGATGTAAGAGAGCTTCAGAAAGCTCAGGCCCCGCCT
TTAATCCCAGCACTTGGGAGGCAGAAGCAGGCAAATTTCTGAGTTCGAAG
GCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAG
AAACTCTGTTTCGAAAAAACAAAAACTATCTTTCCATTTTAATAATTAAT
CTAGAAAAGAATAAGAATGCAAGCAAGCTCAGGCCCAGGGTTAAACCTTC
CTAAGAGAGAATGTGTGAACCCTAGTAAAGGAAGGGGAAAGAAACTAAGG
CCACTTAAGAACCAAAATATCACTTGGCTTATTAGGCTAGGGGGAAAGTC
CAGCTTATATAAGTACTTCCAGGACCTCAAAAACAAAACAAAAAAAACCC
TTATTTCCTCAATCCAAAAAAAGGCCTTTTGTAATAAGGAAAAAATGAAA
AGGAGCCCCAACCCCTAATGGCCCTGTTGTAAAGGCTCGGGAAATTGTCA
CACATGCCCGTGGAAAAAATTTTAAGGGCCAGGGCCCTGTTCCCCCTATC
TCATGGGAACCCTTCTGGCCCTAAAGTTCCCTTTTCCCCCTCCAATAGGG
GAAGGGCCCCTCATGTTCCCGGGGGCGTCTTCTTGTGTTGGACCTTGTTG
TTAAAAACATGGCTTTTCCCTGGTTGTTGTGTAAACCCCCTTTATTGGCT
CCACATACCACTGGGTGGCTAATTCCTAATATAAAATAAAT
NAAATCAGTGTAGCTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTAGGGAAGCTGAGGCGCCAGGATCAGG
AGTTCAAGGTTATTCTCAGCTGCATAGCAAGTTCCAGGTCAGCCTGGGTT
ACATAAAACCTTGCCTGCACATACATACATGCATACATACACACACATAC
TTACATACTTACATACATACATACATACATACATACATACAAAAGGAAAT
TATGTGACGCACCCTAAGGACTTCAAGGATAAGTCTAAAGATCTCTTGTG
AACAGCCGCCTCTCCTGGCCAGGCCCGCAAACATCCCCTGGAAGGTTTGA
GGAGCCACCAACACCCTGAACAGGTGAAAGTGGTGGCTTGGCCTGAAAAT
TTTTACTCAAAAAAGGATCCAGGCCAAGTAAGGAAAAGGGGAGGGGTTTT
TTTTTTTCCCCCCCCCCCCCGGAAAGGCCCCCCCAACAAAAAAAAAGGGG
GGGNGAGAGGATTGGGGGAGCTTTGCGAAAGGCTGCTTCTCCCTCAAAAA
AGGAGTGCTTCTCCCACAAAACGCCCATCTTCGATAACTTCCTTTCACCA
CCATGGCCTGGCAAAAGCATTCGCTGGAGGAGGAAGTTTCCTCTCAAAAT
GTTTGCCTCCGAGGCCACAGCAGGCCAAAGGGAAAAAAAACGAGAAGGCT
CCTTTCCTGACTAAGGAAATGTGGAAAGCATCTCCATGACAAAAAAAACA
TCCGATTTTAACCGCCCTTTCCTGTTTTTGCTTGCTTGCATTGAGCGCGC
ACCATCCCTTATCCTTCATCACTTACCCTTTCTTTCTATATTTCATTCCC
TTCTTCTCTTTTATCTCCCTCACCATTCTTTACTCTTCTAACTCTCTCTA
CTTCCCTACCTCCTTCCCTATACTCCCTCAATTTTCCACACCTTTCTTTA
TCTTCTTCTCTATAACCTACACCTACCCTTTTTATCACTTCCCCTCCCAC
CTCCCTCTTTCTCTCTCCTCTTTCCCCATCTCTATCATCCTCTTACCATC
CTCCATTCCCCCTATCCTTCACTTTCTCTATCAATCACTTATTTACCCCT
TACTACCTATTACCTCCCCATTTATCCCTATCCCCCTCTGTTCACTCCTA
CTCTCTTCTCCCTCCTATCTCTCTCCTATCCTATCTACTTTCACCACTCT
TCACCCCTTCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_e23.b1 MSMg01no064_e23.b1 CHROMAT_FILE:
MSMg01no064_e23.b1 PHD_FILE: MSMg01no064_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:09 2005
         (548 letters)



>mm_chr3_96507102_96508049
          Length = 948

 Score =  942 bits (487), Expect = 0.0
 Identities = 510/523 (97%), Gaps = 11/523 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccatgacttagctcaattggggagcagggggtcactcaccatccagcccataccctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agccatgacttagctcaattggggagcagggggtcactcaccatccagcccataccctgg 463

                                                                       
Query: 61  cggggggcaaacctctgatgcctccttcttgggtttcatcggacaccaggatccatcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cggggggcaaacctctgatgcctccttcttgggtttcatcggacaccaggatccatcttc 403

                                                                       
Query: 121 catgaactggatctcatcacaatccgaacaggaattaagaatttccatgaataaactagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 catgaactggatctcatcacaatccgaacaggaattaagaatttccatgaataaactagg 343

                                                                       
Query: 181 gaggaggacatgtggattcacgaggctggacgcggctggagccacccacggtgttctgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gaggaggacatgtggattcacgaggctggacgcggctggagccacccacggtgttctgac 283

                                                                       
Query: 241 actcacttcctatgctttagtcacctcatctgcatcacccaccctcctggacctccctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 actcacttcctatgctttagtcacctcatctgcatcacccaccctcctggacctccctga 223

                                                                       
Query: 301 gctgctgctgggatagaatacagctgggactgtagctcagtaacagagca---------c 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||         |
Sbjct: 222 gctgctgctgggatagaatacagctgggactgtagctcagtaacagagcacctgcttagc 163

                                                                       
Query: 352 ctgcaggctgagtctgatccctagcactgtgaggg-gaaaggatgtaagagagcttcaga 410
           ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 162 ctgcaggctgagtctgatccctagcactgtgggggagaaaggatgtaagagagcttcaga 103

                                                                       
Query: 411 aagctcaggccccgcctttaatcccagcacttgggaggcagaagcaggcaaatttctgag 470
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 102 aagctcaggccccgcctttaatcccagcacttgggaggcagaggcaggcaaatttctgag 43

                                                      
Query: 471 ttcgaaggccagcctggtctacagagtgagttccaggacagcc 513
           |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 42  ttcg-aggccagcctggtctacagagtgagttccaggacagcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)