Query= MSMg01no064_f01.b1 MSMg01no064_f01.b1 CHROMAT_FILE:
MSMg01no064_f01.b1 PHD_FILE: MSMg01no064_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:09 2005
(423 letters)
>mm_chr3_11000664_11001487
Length = 824
Score = 745 bits (385), Expect = 0.0
Identities = 403/409 (98%), Gaps = 1/409 (0%)
Strand = Plus / Minus
Query: 16 gaattctttc-aaaattctgaaagtgtattgaaagaacaggaagtttcctaatagctcac 74
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaattctttcaaaaattctgaaagtgtattgaaagaacaggaagtttcctaatagctcac 565
Query: 75 actgcctccacaatgtcttccccccaccactggagaaaatgtattccctccaaagaggaa 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actgcctccacaatgtcttccccccaccactggagaaaatgtattccctccaaagaggaa 505
Query: 135 atttgcttgtcatgagtctatgttatcacacaccctttgccaagcctgagccttcatata 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atttgcttgtcatgagtctatgttatcacacaccctttgccaagcctgagccttcatata 445
Query: 195 tagtttgaagaatgtgaaattttaaaagctgcattacattccttgacctcagcacaagat 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tagtttgaagaatgtgaaattttaaaagctgcattacattccttgacctcagcacaagat 385
Query: 255 ttaatacaaagctaaagtcactctttagcatacgctaaatactttcaaggttcttcatga 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaatacaaagctaaagtcactctttagcatacgctaaatactttcaaggttcttcatga 325
Query: 315 tttaacgagttttatgatttctcttgattcaagattcagtgacaatattgtttatgaata 374
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 tttaacgacttttatgatttctcttgattcaagattcagtgacaatactgtttatgaata 265
Query: 375 ataaattgctataatcaggccctgaggttcgctgattgctacactagtg 423
|||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 264 ataaattgctataagcaggccctgaggtttactgattgctacactagtg 216
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 824
Length adjustment: 9
Effective length of query: 414
Effective length of database: 815
Effective search space: 337410
Effective search space used: 337410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_f01.g1 MSMg01no064_f01.g1 CHROMAT_FILE:
MSMg01no064_f01.g1 PHD_FILE: MSMg01no064_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:09 2005
(285 letters)
>mm_chr3_10820668_10821352
Length = 685
Score = 513 bits (265), Expect = e-150
Identities = 280/285 (98%)
Strand = Plus / Plus
Query: 1 accctcaccctatgctacacactgctgtcctcttcactgcaattactccatttttccttc 60
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 accctcactttatgctacacactgctgtcctcttcactgcaattactgcatttttccttc 260
Query: 61 ttcatggatgagagtattcccttctattcagcaataaaaataacaatatgtagtccagac 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ttcatggatgagagtattcccttctattcagcaacaaaaataacaatatgtagtccagac 320
Query: 121 ttctgattttgattttagattctctactttcttttcccattaatgtaagaatcttggaac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ttctgattttgattttagattctctactttcttttcccattaatgtaagaatcttgaaac 380
Query: 181 atgttcatcttaactatcaccaccggctgttaatataatttatttggttaaaagaattgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgttcatcttaactatcaccaccggctgttaatataatttatttggttaaaagaattgc 440
Query: 241 aaaaatatttgatggatttttaaaaatatcaactggaatatttgt 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaatatttgatggatttttaaaaatatcaactggaatatttgt 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
