Query= MSMg01no064_g09.b1 MSMg01no064_g09.b1 CHROMAT_FILE:
MSMg01no064_g09.b1 PHD_FILE: MSMg01no064_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:17 2005
(647 letters)
>mm_chr3_133391560_133392610
Length = 1051
Score = 706 bits (365), Expect = 0.0
Identities = 388/399 (97%), Gaps = 8/399 (2%)
Strand = Plus / Plus
Query: 1 cttaattaatatgaatattattcatgtttaatcct--ttaaacacatctgtatgaaaagt 58
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 201 cttaattaatatgaatattattcatgtttaat--taattaaacacatctgtatgaaaagt 258
Query: 59 cttcacagatttgtggtaaagttagcttttttggtgtaatagtctctgttttgttgtttt 118
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttcatagatttgtggtaaagttagcttttttggtgtaatagtctctgttttgttgtttt 318
Query: 119 cagtgattgtgtaacttggttaaagctttcaccattttgagatttgttatcctttttttt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagtgattgtgtaacttggttaaagctttcaccattttgagatttgttatcctttttttt 378
Query: 179 ----catcaatttaaatcacttggtaataccttctacatctttatatgaaatgtgggcac 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttttcatcaatttaaatcacttggtaataccttctacatctttatatgaaatgtgggcac 438
Query: 235 tgtgggagttgtttattacagcgacaaagtgactcctacgcttatgaaagaaggcatatg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgtgggagttgtttattacagcgacaaagtgactcctacgcttatgaaagaaggcatatg 498
Query: 295 ggatatatctacaaagagttacacatgtgttggagaaagcaaggacagttgtgcccgtgt 354
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 499 ggatatatctacaaagagttacacatgtgctggagaaagcaaggacagttgtgcccgtgt 558
Query: 355 tcctttcccatagggaaggataagaatgtggtatttcat 393
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 559 tcctttcccatagggaaggataagaatgtggtgtttcat 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1051
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1041
Effective search space: 663117
Effective search space used: 663117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_g09.g1 MSMg01no064_g09.g1 CHROMAT_FILE:
MSMg01no064_g09.g1 PHD_FILE: MSMg01no064_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:18 2005
(389 letters)
>mm_chr3_133479144_133479932
Length = 789
Score = 692 bits (358), Expect = 0.0
Identities = 379/386 (98%)
Strand = Plus / Minus
Query: 1 ctatacataaaaatagtaataattattattagaataataaaattattttaattaaaatgg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 648 ctatacataaaaatagtaataattattattagaataataaatttattttaattaaaatgg 589
Query: 61 acatgtaattagatattgataaaaataaaggaagcacaaacatgtatgcatccgtaaatt 120
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 588 atatgtaattagatattgataaaaataaaggaagcacaaacatatatgcatccgtaaatt 529
Query: 121 cataccacacagagttggtacctgttgtgtaagaggctgtccatcatttctttatcagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cataccacacagagttggtacctgttgtgtaagaggctgtccatcatttctttatcagag 469
Query: 181 aatctggataactatgaaaaattcgaataaaatttaatgaacaatattcacgttttacaa 240
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 468 aatctggataactatgaaaatttagaataaaatttaatgaacaatattcacgttttacaa 409
Query: 241 tgtgaaaacatctaggctaacttgactacactctagccggaattctcacaactatttgat 300
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 408 tgtgaaaacatctaggctaacttgactacactccagcctgaattctcacaactatttgat 349
Query: 301 actgaatccctaatctttctgctacagcctcctaagagttgagatcacaggttcttccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 actgaatccctaatctttctgctacagcctcctaagagttgagatcacaggttcttccct 289
Query: 361 tcagtttatggtcatttctagcattt 386
||||||||||||||||||||||||||
Sbjct: 288 tcagtttatggtcatttctagcattt 263
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
