Query= MSMg01no064_g22.b1 MSMg01no064_g22.b1 CHROMAT_FILE:
MSMg01no064_g22.b1 PHD_FILE: MSMg01no064_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:22 2005
(421 letters)
>mm_chr3_146974804_146975623
Length = 820
Score = 652 bits (337), Expect = 0.0
Identities = 384/407 (94%), Gaps = 16/407 (3%)
Strand = Plus / Plus
Query: 17 gaattccaagatttaatttgactgtattactaatcttatttattttctgagtttctaagt 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattccaagatttaatttgactgtattactaatcttatttattttctgagtttctaagt 276
Query: 77 tggtcaagagagaaatttttaccc--tactacaatgtgctatcccctagtggaaggctta 134
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 277 tggtcaagagagaaattttta---attactacaatgtgctatcccctagtggaaggctta 333
Query: 135 gggattgtccagtggaattatattatataaataggctgaaaatgcagattagggcctact 194
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 334 gggattgtccagtggaattatatcatataaataggccgaaaatgcagattagggcctact 393
Query: 195 gaacaactgtttatcatcacagattatcaaagagcaagaaccctggctttctgagttaat 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaacaactgtttatcatcacagattatcaaagagcaagaaccctggctttctgagttaat 453
Query: 255 taatagattagttgtttatttatgtttagtgtgtatgtgcgcacgagtgcacatgtgtgt 314
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct: 454 taatagattagttgtttatttatgtttagtgtgtgtgcgcgcatgagtgcacatgtgtgt 513
Query: 315 gtgtgtgtgtgtgtgtgtgtgtgtgacagagatcgagagagagagagagagagagagaga 374
||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 514 gtgtgtgtgtgtgtgtgtgtgtgtg-------t-gtgagagagagagagagagagagaga 565
Query: 375 gagagagagagagagagacagacagacacacacagagacacagaggg 421
||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 566 gagagagagag---gagacagacagacacacacacagacacagaggg 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 820
Length adjustment: 9
Effective length of query: 412
Effective length of database: 811
Effective search space: 334132
Effective search space used: 334132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_g22.g1 MSMg01no064_g22.g1 CHROMAT_FILE:
MSMg01no064_g22.g1 PHD_FILE: MSMg01no064_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:22 2005
(373 letters)
>mm_chr3_147082300_147083072
Length = 773
Score = 677 bits (350), Expect = 0.0
Identities = 365/370 (98%)
Strand = Plus / Minus
Query: 1 taactgcttcagcatgtatttctcccaggaaagaccttccacactggccagccaaccaca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 743 taactgcttcagcatgtatttctcccaggaaagaccttccacactggccagccaactaca 684
Query: 61 aaaccttgttctcagcacttcttgcaattttagatgtctgatgtttaaggaagcttgcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaaccttgttctcagcacttcttgcaattttagatgtctgatgtttaaggaagcttgcca 624
Query: 121 ccgaaaagtttctagcttctgatttctcaaagcttgtttctccactgctaccccaattca 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccgaagagtttctagcttctgatttctcaaagcttgtttctccactgctaccccaattca 564
Query: 181 aatcagtaaaacctagctcacatccacagaataactctggcatctccacaacaggcagca 240
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gatcagtagaacctagctcacatccacagaataactctggcatctccacaacaggcagca 504
Query: 241 ggcatgctgctgtaaggctttcaaccttactcaggataaacagtagtatactagaagagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggcatgctgctgtaaggctttcaaccttactcaggataaacagtagtatactagaagagg 444
Query: 301 acacccctaccccgtgcaaactgtgtatataactcaactttatatccacaaaatgtacaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 443 acacccctaccccgtgcaaactgtgtatataactcaactttatatccacaaaatatacaa 384
Query: 361 agttgtaagg 370
||||||||||
Sbjct: 383 agttgtaagg 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
