BAC Information

Click to search

BAC

Clone NameMSMg01-064H23
Chromosome3 (Build37)
Map Location 145,975,934 - 145,976,334
singlet/doubletsinglet
Overlap genenone
Upstream geneCol24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
Downstream geneSsx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064H23.T7 (MSMg01no064_h23.b1)MSMg01-064H23.TJ (MSMg01no064_h23.g1)
ACCAG289954AG289955
length1,183748
length of high quality
(start - end)
451 (33 - 483)---
definitionCHROMAT_FILE: MSMg01no064_h23.b1 PHD_FILE: MSMg01no064_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:28 2005CHROMAT_FILE: MSMg01no064_h23.g1 PHD_FILE: MSMg01no064_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGAGCAGTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTC
CACACCAGTGCACACCGATGTATCTACACATTAGGATTGAAGCACAGCGA
TTTCAATTTTTTTTATTCAGTAGACCCGCAATTAATAGAAGTCAAACCAT
ATTAGTGTGTATCATCCATTGGCACTTAGCACCTTCCTGGTGACGTGCAG
CCATTTCCTCTGAGTAGGGTCTAGACGTGTGCATGAATGCGTGTGCATCA
GCTCATAGAAGCTCTCCGCCCCCAAGCCCCCAGCAGCACCGAGCCGCTTT
CTATCTCTATAGACTTGGAAGTGATGTTTCAAATATTCTCAATATCTGAG
AGGTTCAGTTATACATATATAGTAATCTTTGCGTGTGCATGATGTGTGTG
TATGCTTACATGTGAGAATGTAGGTACAGGTCATAGCAGTCTCTGTTTTT
TTTTTCCCCCCCCCCCAGNNTTNNATCTTGTTGAAGAAAGAAAGACTTAC
TGTCACCTGTATACACGAGGCTGGCTCACATTCAAGCTTCCTTGGAATCT
TCACCTCCCACCTCACCGCAGGTGATTACGGTCACGTGTTACCATATCCA
GCTTACCTTGGGTTCCCGGGGTTCGAATTTAGGACCTCACATTTGCCCAG
CAAGCATTTTCCCTACTGAGCCACCTTCCCCAGCCCCTTGACTTGTGTTT
CTTAACGGGTCTCTAAGTTAGTTGTTCTGTGATCTTATGCTACTGAATCT
TTGAAACTTCATTTAGGGATCGCTTTATGTCCTGAATTGCTACGAGCGCT
CGCAAGTCTGAAGTGCAATTTTGAAAAGAGCAAATGTTCTGTGACGGTGA
AGTGCATCATTTCCATGCAAAAATTTCATCTTCAGACTTTTTAAGTCCTT
ATTTATCAAAATTCTTTTATAAACATTCCCTGGGGGCTCTTTGGCCTTCT
TTGACTTAACATTTTTCTTCCTCAAAAGATGTATAAATTCCTCCCCCCTT
CTTGATTCTCAAAATATTCATTCAAGGGCTCCTTTTTGAATACCCCGTTG
TAAAGTTTCTTGCTCTTTTTCTGACATAAAAAATATTTTTCTCCCAATCA
TTCAATCTTATAAGCGATTCTCTTTTTCTCCATAGTCGTTATTGTCTGAT
TTACTCTCGTCCATCCTCATCACTTCTAGACTN
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCGGAAGGCCACACAGCGCCATGCCTGGGGGGAAG
GCTGCGGAAATGACGCCTCTTGAAGGGGGGGCCCTGTTGTCCTATGGGCA
GGCGGGGCGAAGTCTCTGCTGAGGGGCGGGGCCTGATGCTAAACGGAAAG
CGACCCAGCCTGCCGCTAGGAAGGGGGGCCCTAAAAGGGGGGGCCTGATG
CTGAACTTTGTGAAAAAGTTGGGCTTGCAGCCAATTGACTGGAATCCCAC
CCCGGCTGCTGGGGGCATTACCTATGAGTAAATGTAAAATGGGACAGGGG
TCTTCTTTTTTTTCCACCGCCCCCCCGGGTTAGGTAAACAGTCTTGACCC
AGGAAACCCCCACCCAACTACAACAAATTTAATTCTCTCGATCACTCTAC
ATCACTCTACACCATTTCATGATGGGGTGGCCTGAACGTTTTCGGCTCAT
TCATCTTACAATTGATTTTGAATCTCTTGCTTGACCATGTTCCCCGAACC
CCACCCTTGCCTATATAGTTAACAACAGTGCTTGGCTGGAAATAAATAGA
ACGTCCACTGTAAAACTCCAAAAGCTCCGGTTTTCTTTTTTGAACCTTCC
TTCTGTTTGAGACCCTTCTTTTCCAGTCTCTCTACCAAGGGTATTCTTTA
AAAGGCAAATGCCCGCGTGATATTATTGGCCCTTCTCCCCCTTGTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_h23.b1 MSMg01no064_h23.b1 CHROMAT_FILE:
MSMg01no064_h23.b1 PHD_FILE: MSMg01no064_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:28 2005
         (451 letters)



>mm_chr3_145975722_145976572
          Length = 851

 Score =  721 bits (373), Expect = 0.0
 Identities = 394/401 (98%)
 Strand = Plus / Plus

                                                                       
Query: 13  gaattccacaccagtgcacaccgatgtatctacacattaggattgaagcacagcgatttc 72
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattctacaccagtgcacaccgatgtatctacacattaggattgaagcacagcgatttc 272

                                                                       
Query: 73  aattttttttattcagtagacccgcaattaatagaagtcaaaccatattagtgtgtatca 132
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 273 aattttttttattcagtagaaatgcaattaatagaagtcaaaccatattagtgtgtatca 332

                                                                       
Query: 133 tccattggcacttagcaccttcctggtgacgtgcagccatttcctctgagtagggtctag 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tccattggcacttagcaccttcctggtgacgtgcagccatttcctctgagtagggtctag 392

                                                                       
Query: 193 acgtgtgcatgaatgcgtgtgcatcagctcatagaagctctccgcccccaagcccccagc 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 acgtgtgcatgaatgcgtgtgcatcagctcatagaagctctccgcccccaagcccccagc 452

                                                                       
Query: 253 agcaccgagccgctttctatctctatagacttggaagtgatgtttcaaatattctcaata 312
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agcactgagccgctttctatctctatagacttggaagtgatgtttcaaatattctcaata 512

                                                                       
Query: 313 tctgagaggttcagttatacatatatagtaatctttgcgtgtgcatgatgtgtgtgtatg 372
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 513 tctgagaggttcagttatacatatatagtaatctttgcgtgtgcatgatgtgtgtgcatg 572

                                                    
Query: 373 cttacatgtgagaatgtaggtacaggtcatagcagtctctg 413
           ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 573 cttacgtgtgagaatgtaggtacaggtcatagcagtctctg 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)