Query= MSMg01no064_j11.b1 MSMg01no064_j11.b1 CHROMAT_FILE:
MSMg01no064_j11.b1 PHD_FILE: MSMg01no064_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:38 2005
(426 letters)
>mm_chr3_130643136_130643961
Length = 826
Score = 752 bits (389), Expect = 0.0
Identities = 404/409 (98%)
Strand = Plus / Plus
Query: 18 gaattcatctcagcccacagagccaaatggtcttcaagcacaaccagccaggggaggcca 77
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gaatccatctcagcccacagagccaaatggtcttcaagcacaaccagccaggggaggcca 277
Query: 78 gtgccagcaacaactgaatgttggccgccgttcaggacaagcctggtcctttctcctcct 137
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 278 gtgccagcaacaactgaatgttggctgcagttcaggacaagcctggtcctttctcctcct 337
Query: 138 ctggggcttccccaaacttctgtttcaacacccaggccagagattgccttacactgagcc 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctggggcttccccaaacttctgtttcaacacccaggccagagattgccttacactgagcc 397
Query: 198 agaacctcgggcagctgctaaaggtgcctcaacctaagaaagcacagggtcacctgcttg 257
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agaacctcgggcagctgctgaaggtgcctcaacctaagaaagcacagggtcacctgcttg 457
Query: 258 acccaatcactccttgacatacagagctgaaaccagagccttcaaggcattttctaaaaa 317
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 458 acccaatcactccttgacatacagagctgaaaccagagccttcaaggcatgttctaaaaa 517
Query: 318 acatttttgtcatgagaaaggcatatgatagtctctgttgtcatttataacttctgcatg 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acatttttgtcatgagaaaggcatatgatagtctctgttgtcatttataacttctgcatg 577
Query: 378 tctggtaaccagcattgttgttactgcgggtaccccagaactgtgtttg 426
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tctggtaaccagcattgttgttactgcgggtaccccagaactgtgtttg 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_j11.g1 MSMg01no064_j11.g1 CHROMAT_FILE:
MSMg01no064_j11.g1 PHD_FILE: MSMg01no064_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:38 2005
(588 letters)
>mm_chr3_130704698_130705684
Length = 987
Score = 1029 bits (532), Expect = 0.0
Identities = 574/588 (97%), Gaps = 1/588 (0%)
Strand = Plus / Minus
Query: 1 actcattctcatgtgatctcagaaactaagcagggctgagcctggttagtacttgtataa 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 actcattcttatgtgatctcagaaactaagcagggctgagcctggttagtacttgtataa 792
Query: 61 gagaacaaataaaataaagtaaatggaagatagttgcatttccaaatgattctttaaaat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 791 gagaacaaataaaataaagtaaatggaagatagttgcatttccaaatgattccttaaaat 732
Query: 121 gcctgagaaatatctaagtacttgttacaaaggggtagtttgagaagctaacaagaggag 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gcctgaaaaatatctaagtacttgttacaaaggggtagtttgagaagctaacaagaggag 672
Query: 181 ttgccaatccttgtccttggagaaaataacttccaactgggcagggggtttcccattctc 240
||||||| ||||||||||||||||||||||| |||||| |||| || |||||||||||||
Sbjct: 671 ttgccaaaccttgtccttggagaaaataactcccaactaggca-ggtgtttcccattctc 613
Query: 241 tttaataaaaaatatataaacacctgcccttcttctctacaatctatgtttctacctcta 300
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 612 tttaataaaaaatatataaacaccttcccttcttccctacaatctatgtttctacctcta 553
Query: 301 aactcttctgctcagggaagtgtccagtgtcataaaaaactcaaacatgggtttgttcac 360
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 552 aactcttctgcgcagggaagtgtccagtgtcataaaaaactcaaacataggtttgttcac 493
Query: 361 ggtccttgcataagaagggcaattctgcttaagacagactctactgatccttgtttaaat 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 492 ggtccttgcataagaagggcaattctgcttaagacagactctaccaatccttgtttaaat 433
Query: 421 ttgaacaggcaagagaaggctccaagaagttttgataatagggtgtttggactctctgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttgaacaggcaagagaaggctccaagaagttttgataatagggtgtttggactctctgcc 373
Query: 481 atcttttaatttgttagcagttatagtgggattgatcaggagcattcaaacttcctagtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atcttttaatttgttagcagttatagtgggattgatcaggagcattcaaacttcctagtc 313
Query: 541 cttctggaggaccaaagcatctcagagagttaaatatagtcattttag 588
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cttctggaggaccaaagcatctcagagagttaaatatagtcattttag 265
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space: 564706
Effective search space used: 564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
