BAC Information

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BAC

Clone NameMSMg01-064N09
Chromosome3 (Build37)
Map Location 130,563,449 - 130,563,852
singlet/doubletsinglet
Overlap genenone
Upstream geneCfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811
Downstream geneLOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064N09.T7 (MSMg01no064_n09.b1)MSMg01-064N09.TJ (MSMg01no064_n09.g1)
ACCAG290194AG290195
length1,221749
length of high quality
(start - end)
414 (37 - 450)45 (79 - 123)
definitionCHROMAT_FILE: MSMg01no064_n09.b1 PHD_FILE: MSMg01no064_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:05 2005CHROMAT_FILE: MSMg01no064_n09.g1 PHD_FILE: MSMg01no064_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCGGCACTGCGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAA
TTCCTGTCCTAACTTCCTTTAAAATGAACTAAGATATGGAAGTTTAGGCC
AAATAAACCCTTTCCTCCCCAGTCTGCATTTGCTCCCCCCATTTATTATA
GCAAAAGTAGCCCTAATCATGGTGTTTTATTATAGCAATAGTAACCCTGA
CTAACGCATTTAGAAAAGGTATCAGAATCAATGTTGTTGTTTGGTGCTGG
TTGCAAGTCCTTCAATAGGAAGATGGCGGCTGGAGGTTGCCACACTTAAA
AATGTCAACCAAGTTATCATACTCAGAAACTGGAGGAGGGATTGAATTGT
GTTGAATTGTCTATCCTTTATTTTATTTGAATCAATTCTCCTCTCGCTGC
CTATTTATGACTGAGTTGACTATGGATAGAGGCTTGGTGCCAGTGTCTGT
TGTTTTTTTTCCCCCCCCCACNNAAGGACGCTGCTCTTCAAAAAAGAGGC
TTCCAGTCTTATGAATCGGAGATGGTCATAATCATTGTTGATGGTGTCTG
TTTGTGACTTGTTTCCTTTCATATGGTTTTTGAAATACTAATGGCTTCTT
GTATTTTTATTTCTGTTTGTCTCTCTTTGCTTTCTTTTTCTCCTTCTCTA
TTACTTATTTTCTTTTTTTTTTCTTTCTTCCTTTATTTATTTCTTTTATT
CTTTACTCTTTTCTTTTCTTCTTATTTATTCTTTTTTTTTCTTTATCTTT
CTTTCTTATTTTTTTCCTTCTTCTTTTTTTTTTTTTTTTTTTTTCCTTTT
TTTTTTATTTCTTTTTTATTCTTTTTTTTTTTTTTTTTCATCTTCTTCAT
TCTTCCTTTTTTTTAATTTTTTTTCTTATTTTTTCTTTTCTATTTTTTTT
TTTTTTTTTTTTTTTTCTTTCCTTATTTCTTCTTTCATCTTCTTTCTTTT
TTCTTGTCTTTCTATTCATTTTTTTTTTTCTCCTCTTTTTCTCTTTTTTT
TCTCTCTTATCCTTTTTCTTTTTCTTTATTTTTTCTATTTTATTTTTTTT
ATCCTTTATTATATTTCTCTTTTTCCTTCTTCTTATAATTTATTCTCTCT
CTTTTCTTCATCTTATTATCATTACTCTCTTTCTATTATTCTACTTTCTT
TCTTTTCTTATTTCTCCTTCTTATTACTATCTTCATCTTCCTTTTACAAT
CTTCTTTCTCTTCTCTTTTTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCGGAAGGGTGAGACGGGAG
CATCCAAACTGTGAAGCCAGCCTGGGCTGTAGAGCAAGACTGAGAAGGAA
AGAAGGAAGAGAGAGATGGGAAGAAGGAAAGGAAGAAGAAATGAAGGCAA
TCCAGTTTAAAATCAAATTATGTAAGACTTTTTCCTCTTCCAATAACATT
TATTAATTTGAAGCATTATTAGATAATGCAAAAGACCCTTGATATATGGG
TTAAACTTTCATCTTAAAAAATATCAATAGTTTCCCAAGGAATATGTATA
TATATATATTTTTTCTTTTCCCCCCCCCCGGACTTTAAGTATTCCGATTA
GGTTTAGCCCCCCCCCACCCCGACAAAAAGGGTATTCCCACCTTCCCAAG
AAGCCTGGGTGGAGGAAGCCCTCTAGACAGGAAGTGAACCAGTTCGTTAC
CTTGCTTGTGAAGGTCCCCTTCCCCCACAGGCCAAGGTAACCCTACTCGC
TTTCACGCCCTTTTCTAAGGAGCCCCGGATTATCTGCTCTATCCGTCTGC
ATCTTAAGCTAGTGTTCCCTAACCCTGTTCTTTCCCTCCATACCTTTTCC
CCCCTTTTTTTTTTTTGTGCCCCTTTCTACCCCCTTCCGCCCTTTCTCTC
CTTTTTCCCCCTCCCTTCTCTTTTCCCCTCTACGCCTGCTCTTCTGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_n09.b1 MSMg01no064_n09.b1 CHROMAT_FILE:
MSMg01no064_n09.b1 PHD_FILE: MSMg01no064_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:05 2005
         (414 letters)



>mm_chr3_130563081_130563894
          Length = 814

 Score =  714 bits (369), Expect = 0.0
 Identities = 395/409 (96%), Gaps = 11/409 (2%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattcctgtcctaacttccttt-aaaatgaactaagatatggaagtttaggccaaataa 70
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 772 gaattcctgtcctaacttcctttaaaaatgaactaagatatggaagtttaggccaaataa 713

                                                                       
Query: 71  accctttcctccccagtctgcatttgctcccccc-----atttattatagcaaaagtagc 125
           ||||||||||||||||||||||||||||     |     |||||||||||||||||||||
Sbjct: 712 accctttcctccccagtctgcatttgct-----catggtatttattatagcaaaagtagc 658

                                                                       
Query: 126 cctaatcatggtgttttattatagcaatagtaaccctgactaacgcatttagaaaaggta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cctaatcatggtgttttattatagcaatagtaaccctgactaacgcatttagaaaaggta 598

                                                                       
Query: 186 tcagaatcaatgttgttgtttggtgctggttgcaagtccttcaataggaagatggcggct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tcagaatcaatgttgttgtttggtgctggttgcaagtccttcaataggaagatggcggct 538

                                                                       
Query: 246 ggaggttgccacacttaaaaatgtcaaccaagttatcatactcagaaactggaggaggga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ggaggttgccacacttaaaaatgtcaaccaagttatcatactcagaaactggaggaggga 478

                                                                       
Query: 306 ttgaattgtgttgaattgtctatcctttattttatttgaatcaattctcctctcgctgcc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttgaattgtgttgaattgtctatcctttattttatttgaatcaattctcctctcgctgcc 418

                                                            
Query: 366 tatttatgactgagttgactatggatagaggcttggtgccagtgtctgt 414
           ||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 taaaaatgactgagttgactatggatagaggcttggtgccagtgtctgt 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)