BAC Information

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BAC

Clone NameMSMg01-064O11
Chromosome3 (Build37)
Map Location 114,447,297 - 114,447,744
singlet/doubletsinglet
Overlap genenone
Upstream geneCol11a1, LOC100043220
Downstream geneOlfm3, EG546808, Edg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064O11.T7 (MSMg01no064_o11.b1)MSMg01-064O11.TJ (MSMg01no064_o11.g1)
ACCAG290244AG290245
length1,2451,275
length of high quality
(start - end)
655 (89 - 743)326 (70 - 395)
definitionCHROMAT_FILE: MSMg01no064_o11.b1 PHD_FILE: MSMg01no064_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:12 2005CHROMAT_FILE: MSMg01no064_o11.g1 PHD_FILE: MSMg01no064_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTCTTTTTNNATCATTGGGCGCTAAGACTCACTAAGGGAGAGGATCC
GCGGAATTATTATGGAGTTAATTTCCTTATAAGAGCCGTTGAATTATTTC
GGTATAACTACAACCCCCTTTCCCCAATAAATGTATTCTACAAATAGGTT
AGGGCCTGTGTTTCTTTTCTATAGATGTTAATAATCTAAGATTGCCATAT
AAATTTTTGTATGTTAGCAAAGTGTTTAGATAAATACACAAAGAATAAAT
ATACTTTTATATTTTCAGTATACTAATTTTCAGAAAGTATTCCACTTGAG
TATGAGTAACAAGTCTTACAATTTGTTTAATTTCTCTTATTTATTTTATT
ATGATTATTTTTATTTGGGTATGACAGGACATGGTAAGGGTCAGAGGAAC
ACCTGTTGTAATCTGTTCTCTAATTTTGACTTGTGGGTAGGTGGGGATGG
AACTCAGGTTGTCAGGTTTAATGGCTTACCCAATATGACATCTTGCCAGC
CCAGGTTTTTAATCTCTAATGCATTAACAAGGTCAATAAAAAAAGAAACC
AAGTTATCCATGAGTGTGCTGAGTCTGAAGGACAGGAGTAGCCAGCCTCA
TTTCCTACAATGGAAAGTTCTCCATTATATCAAAACTGCTCAACCACTCA
GCAATGGCACGATTTGTGGGCACTGGTGATGGACAACCTTATTAACACAC
TGTATTGTGATTCAAGACACCTGCATGTAAACCTAGGGTTCCAATATCCA
CCAGAAGATAGAAGAAGCCATTAGCATGACAAGGAGCTGAATCACAAATG
GATGGGCTGAAGAAGGAATCGTTTCAGTTCATATAGGTTAAAACTTGCAT
GGGATATTTCCAAATTTAAAGTTTGACACTAACTTATGTAGTAACGGGAT
ACTTTAGCCCCAAGGTAAAAGAAGTAACTTAAAAGAAGGGCTTTTAAATG
AATGAAGAACATCTGTTTTGAAGCCAAAAAAAACTTTAAAGGTTTTATCC
TAAAACCCTTAAACTCCTGGCTAACCTTTTCCCTAATAATTAAAAATCTC
GGAATTTTAAAACCCCTTTTGAATTTCCCCCCAAAAAAAAAAAAGGGGTT
TTTTTTTCTCCCGCGTTTTAAAAAAAAAAAATTCTTTTGTGGGGGGAGAA
CTCCCTTGATAAAAACCACAGTGGGCACTTCTTGTTAAACAAAAAATTGT
GGTAAACAAAACAAAAAATCTTCTTCCTCTTGCCAGTGTTTTGTG
NNTTTTGAGGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTTAACTATGTACCACATTTTTTTAAT
AGGGATATTTGATTTTCTGGAGGACAGCTTCTTGAGTTCTTTGTATTAAG
GAAAATAATTGTTGCTTCCTGTTATTTTTGTTGTTAGAGTTGGGATTCTG
TTCTTGTGTCTATCTTCTTTTAGGTTTGTTGAAGGATTACTTTCTTGCTT
TTTCTAGGGCATAACTTCCCTCCCTGTGTTGGTGTTTTCCCTTGAATATC
CTTTGAAGGGCTAGATTCGTGGAAAGATATTGTGTAAATTTTGTTTTGTC
ATGAAATACTTTGGTTTTTCCATTTATGGAAATTGGGAGTTTTGCTGTTT
ATAGTAAGTAGCCTAGGCTGACATTTGTGTTTTTTAAAGTCTGTATATTT
TTTTCCCCCCCCCCCTTGGTTTCATAGACTCTGCTAAAAAGAAAAGGGTA
AATCTAATAGGCCTGCCTTTATATGTTACTTGACCTTTTTTCTCTTACTG
CTTTTAATATTCTATCTTTAGGGCATTTGCTGTTCTGATTATTATGCGCC
AGGAGGAATTTCTTTTCTGGTCTAGCCTATTTGGAGTCCTGTAGGCTTCT
TGTATGTTTTGGGCACTTCTCTCTTTATGTTAGGAAAGTTTTTGTCTTTA
ATTTTTTTTGAAAACTGTTGTTGGTTAAAAATCTTTCTTTCTCTTTCTAT
ACCTTACTATTCTTAAGTTTTGTCCCTCCCTATTAATGTCCTGGAATTCC
CTGTAATGTTTTAACCTTACAATCTTTTTTGCTCTTTGCATTTTTCTTTA
CTAATTGCTTTCCTCGTTCTTCATTGGATTCTTCTTGCTATCTGAATATT
CTCCCCCTTTTATAACTTCTTTATTCCCTTTTCGGATTTCTACTCTCTCT
TTTTCCCTTAATCCCTTTCCTCCTAATTATTACTATCCTTCTAATCTGTC
TCTCCCCTTTCGCTTTTTATTATATTTTCCCTTTCTTCTTCCCTCTTTTC
TCTCTTCTATGGTTGTCATTTCTTCCTCCCTCCATTATCTCTCTTCTCTT
TGATTTTCTCCCCAATTTCTCGTTTTTATCTGTATACTCCTTCTTATATA
TTTTCTTCTGATCACTCCCCTATTTCTTTCTTTTTATTACTTCTCCTTTT
CTCATTCTACTTATTCTCTTTCTCTCTCCTTCTTATATTACTCTGCATAT
ACTATCCGCTACTACTCCTCTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_o11.b1 MSMg01no064_o11.b1 CHROMAT_FILE:
MSMg01no064_o11.b1 PHD_FILE: MSMg01no064_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:12 2005
         (655 letters)



>mm_chr3_114447297_114448351
          Length = 1055

 Score =  835 bits (432), Expect = 0.0
 Identities = 444/452 (98%), Gaps = 8/452 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaattatttcggtataactacaac----cccctttccccaataaatgtattctacaaa 56
           ||||||||||||||||||||||||||    |    |||||||||||||||||||||||||
Sbjct: 448 ttgaattatttcggtataactacaacaaaac----ttccccaataaatgtattctacaaa 393

                                                                       
Query: 57  taggttagggcctgtgtttcttttctatagatgttaataatctaagattgccatataaat 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 taggttagggcctgtgtttcttttctatagatgttaataatctaagattgccatataaat 333

                                                                       
Query: 117 ttttgtatgttagcaaagtgtttagataaatacacaaagaataaatatacttttatattt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttttgtatgttagcaaagtgtttagataaatacacaaagaataaatatacttttatattt 273

                                                                       
Query: 177 tcagtatactaattttcagaaagtattccacttgagtatgagtaacaagtcttacaattt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcagtatactaattttcagaaagtattccacttgagtatgagtaacaagtcttacaattt 213

                                                                       
Query: 237 gtttaatttctcttatttattttattatgattatttttatttgggtatgacaggacatgg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gtttaatttctcttatttattttattatgattatttttatttgggtatgacaggacatgg 153

                                                                       
Query: 297 taagggtcagaggaacacctgttgtaatctgttctctaattttgacttgtgggtaggtgg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 taagggtcagaggaacacctgttgtaatctgttctctaattttgacttgtgggtaggtgg 93

                                                                       
Query: 357 ggatggaactcaggttgtcaggtttaatggcttacccaatatgacatcttgccagcccag 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ggatggaactcaggttgtcaggtttaatggcttacccaatatgacatcttgccagcccag 33

                                           
Query: 417 gtttttaatctctaatgcattaacaaggtcaa 448
           ||||||||||||||||||||||||||||||||
Sbjct: 32  gtttttaatctctaatgcattaacaaggtcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)