Query= MSMg01no065_b04.b1 MSMg01no065_b04.b1 CHROMAT_FILE:
MSMg01no065_b04.b1 PHD_FILE: MSMg01no065_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:28 2005
(234 letters)
>mm_chr3_121145523_121146157
Length = 635
Score = 426 bits (220), Expect = e-124
Identities = 229/234 (97%), Gaps = 5/234 (2%)
Strand = Plus / Plus
Query: 4 ggaattcctccagttc---cccacaccatagaatgactcttggtttctatactacaatca 60
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctccag--caagcccacaccatagaatgactcttggtttctatactacaatca 261
Query: 61 tctagggcagggtctgcctttgaagtgtgcttcctagccacagaacacagaaaaggagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctagggcagggtctgcctttgaagtgtgcttcctagccacagaacacagaaaaggagac 321
Query: 121 tgaagaagctgaaagaagaatctggagaccacgtggcagatgctgggttttgttgttgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgaagaagctgaaagaagaatctggagaccacgtggcagatgctgggttttgttgttgtt 381
Query: 181 gttgttgttgtttttgttttgttttgtttttgttactggtctatcattttgagg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gttgttgttgtttttgttttgttttgtttttgttactggtctatcattttgagg 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space: 140850
Effective search space used: 140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no065_b04.g1 MSMg01no065_b04.g1 CHROMAT_FILE:
MSMg01no065_b04.g1 PHD_FILE: MSMg01no065_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:29 2005
(501 letters)
>mm_chr3_121308823_121309724
Length = 902
Score = 835 bits (432), Expect = 0.0
Identities = 483/500 (96%), Gaps = 2/500 (0%)
Strand = Plus / Minus
Query: 4 aaaaac-aacaaactaaaaaccagacatgcccataagccaatctcttgaaggcaattcct 62
|||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 823 aaaaacaaacaaactaaaacccagacatgcccataagccaatctcttggaggcaattcct 764
Query: 63 caactgaggtatcctcttcccaggtgactccagtttgtgtcaagttgacagaagataacc 122
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 763 caactgaggtattctcttcccaggtgactccagtttgtgtcaagttgacagaagctaacc 704
Query: 123 aatgaaggaactcagatgagaaagagtgacaagcgttgactcacacataggcatggacca 182
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 703 aatgaaggaactcagatgagaaagagtgacaagcgtggactcacacataggcatggacca 644
Query: 183 gcgctgtgcccagtgaacgtgagtgaggcaggccaccttgggtgaacctgagacacggga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gcgctgtgcccagtgaacgtgagtgaggcaggccaccttgggtgaacctgagacacggga 584
Query: 243 aaagccttaccttgaaaacttat-aggggccattgagagctcaggtgccgaggccaaagc 301
|||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 583 aaagtcttaccttgaaaacttatcaggggtcattgagagctcaggtgccgaggccaaagc 524
Query: 302 ccaggaggaagagatgtaggtcaaggaagaagggatgtaggtcaaggttagaagctgagg 361
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 523 ccaggaggaagagatgtaggtcaaggaggaagggatgtaggtcaaggttagaagctgagg 464
Query: 362 agcacggggtccactctcaggtcacactttgagagtgagtctttagagttgatgttctca 421
|||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||
Sbjct: 463 agcacggggtccactctcaggtcacactttgagagtcagtctttggagttgacgttctca 404
Query: 422 aataccttatgtggccctaagtaaaactacccatcatgaactgcgaatggttctcaactg 481
|||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 403 aataccctacgtggccctaagtaaaactactcatcatgaacttcgaatggttctcaactg 344
Query: 482 atttacttatccctgacaac 501
||||||||||||||||||||
Sbjct: 343 atttacttatccctgacaac 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 902
Length adjustment: 10
Effective length of query: 491
Effective length of database: 892
Effective search space: 437972
Effective search space used: 437972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
