Query= MSMg01no065_b21.b1 MSMg01no065_b21.b1 CHROMAT_FILE:
MSMg01no065_b21.b1 PHD_FILE: MSMg01no065_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:32 2005
(578 letters)
>mm_chr3_52508105_52509082
Length = 978
Score = 861 bits (445), Expect = 0.0
Identities = 478/489 (97%), Gaps = 2/489 (0%)
Strand = Plus / Minus
Query: 3 ggaattcttgctctctaccctacagagctggtttgtggctctaccagaccacaccctgta 62
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 488 ggaattcttgctctcaaccctacagagctggtttgtggctctgccagaccacaccctgaa 429
Query: 63 ccactcttacacttctttatacttcgcccaattctactcctagagactcagtcattagaa 122
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 428 ccactcttatacttctttatactttacccaattctactcctagagactcagtcattagaa 369
Query: 123 tacttgtgaagaacaaaatccagttttatttcagtatctttgtatgactcttcatataaa 182
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 368 tacttgtgaagaacaaaatccagttttatttcagtatctttgtaagactcttcatataaa 309
Query: 183 accttttgcgagccagaaaaaaaaaatatccttcccagcttgtgcaaagtacaactcaga 242
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 accttttgcaagccagaaaaaaaaaatatccttcccagcttgtgcaaagtacaactcaga 249
Query: 243 aaagacgggtaccaaagttgcatcactggaataaaagcttagctagtgtcatggcttatc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaagacgggtaccaaagttgcatcactggaataaaagcttagctagtgtcatggcttatc 189
Query: 303 ttcattgagaccttgatgagtttgagaagcacctacaagaccaataaatcacatatctgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcattgagaccttgatgagtttgagaagcacctacaagaccaataaatcacatatctgg 129
Query: 363 gtatctctatgagggcatttccagaaagactaacccctgaatgttgatggtacccgtctc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gtatctctatgagggcatttccagaaagactaacccctgaatgttgatggtacccgtctc 69
Query: 423 ttatgcacagggcccagatgcaatcaaaggagaaaa-gttcaccaggaagaactatctcc 481
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 68 ttatgcacagggcccagatgcaatcaaagg-gaaaaagttcaccaggaagaactatctcc 10
Query: 482 atccctttc 490
||||||||
Sbjct: 9 ctccctttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_b21.g1 MSMg01no065_b21.g1 CHROMAT_FILE:
MSMg01no065_b21.g1 PHD_FILE: MSMg01no065_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:32 2005
(538 letters)
>mm_chr3_52382197_52383135
Length = 939
Score = 980 bits (507), Expect = 0.0
Identities = 531/539 (98%), Gaps = 1/539 (0%)
Strand = Plus / Plus
Query: 1 ttgtctgtgatctttgg-aacatggggctgtggcagaccagggtttccagtttggaattt 59
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtctgtgatctttggaaacatggggctgtggcagaccagggtttccagtttggaattt 260
Query: 60 gctgtgcccttataacttgaaagtgtttttaattccattcaactcctttccttgggcatg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtgcccttataacttgaaagtgtttttaattccattcaactcctttccttgggcatg 320
Query: 120 tgatccacctgggtagctcctgttagcatcagtcttacacctatctggggtcctggtgct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatccacctgggtagctcctgttagcatcagtcttacacctatctggggtcctggtgct 380
Query: 180 ctctgcttagtgcttgggcattgctgtatgcccattctgagagaccatggtctagttccc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctgcttagtgcttgggcattgctgtatgcccattctgagagaccatggtctagttccc 440
Query: 240 atgtcaccattgagccctctgtgacttgaagtgggttccctcagagttaccttctcatcg 299
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgtcaccattgagccctctgtgacttgaagtgggttccctcagagttaccttctcatcg 500
Query: 300 cttctttctctgatgtgaaattcaggtaaatgactaggacattccccgatttggtgcttt 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 cttctttctctgatgtgaaattcaggtaaatgactaggacattctttgatttggtgcttt 560
Query: 360 taaaacaaatctgcacagtcattaagaaatgaaggcttgtgttgtgtggagtgggtctta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaacaaatctgcacagtcattaagaaatgaaggcttgtgttgtgtggagtgggtctta 620
Query: 420 tctattatcagcgttggttacttctatagaacaatgttagttgtttctctcgagtcttga 479
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tctattatcagcgatggttacttctatagaactgtgttagttgtttctctcgagtcttga 680
Query: 480 cagcctgtgtgagagccattggagctctcctttatcctgcctctatttagagctgcgat 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagcctgtgtgagagccattggagctctcctttatcctgcctctatttagagctgcgat 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 939
Length adjustment: 10
Effective length of query: 528
Effective length of database: 929
Effective search space: 490512
Effective search space used: 490512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
