BAC Information

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BAC

Clone NameMSMg01-065H22
Chromosome3 (Build37)
Map Location 43,319,251 - 43,319,617
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065H22.T7 (MSMg01no065_h22.b1)MSMg01-065H22.TJ (MSMg01no065_h22.g1)
ACCAG290692AG290693
length700708
length of high quality
(start - end)
370 (40 - 409)413 (68 - 480)
definitionCHROMAT_FILE: MSMg01no065_h22.b1 PHD_FILE: MSMg01no065_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:01 2005CHROMAT_FILE: MSMg01no065_h22.g1 PHD_FILE: MSMg01no065_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTCAA
CAAAGATTGCTCAAATTCATTCATCTTGAAACACTTTTCAATGTCTTGAA
GCAGCAGGCTTGATAAAAATGTGAAATAGCTTCTTAAAGACTCAGCTGCA
ATGTGATTCATGTGAAAATGTTTTCAGTGCTGTGGCAATGTTTCTTCAAG
CCATATTGGTGTGAAAATGGCAAGACTCCCATTCACTGATACTTAACACA
ACCTTCTCTGAAACGTTCAGTTCCTCCTGCATGAAATTTAATACTCACTG
ATCTGTAGGTATTAATTTCAGAGAAATAGGTACTTCAGTAGAAAATAGTG
ATACCATTGAGCTTGAAGTTAAGAGCGATAACTGGGTCCTTTCCGGTCCA
CGCCAGCACCAGGGCACCTTGGGCACAGAGTCCTCATACACCCCCAAGGT
CTACAGGACCCTCCACAGGATCTTAAGACCTCTGGTGAGTGGAACACAAC
TTCTGCTCCAATCCAATTGCGCTGGACCTGATACTGCATTACTTATGGAA
GCAGAAAACCCATGCTGGACCAGGGTCACAAGTCCCATATATTCGCGTCA
GTACTGGGTCACCTTGGGCACAGATTCTGCGTACAACCCCAAGGTCCCCA
CAGGAATCCCACAGGATCTTATGACCTCTGGTGAGAGGATCACAATTTGA

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCACCCGGGTATTTGTCCCATATGCAATCGCC
AATCTCAAACACTAGTGTGGGTGACAAGAAGTGCTTGCTGACAGGAGCCT
GATATAGCTGTTTACTGAGAGGCTCTGCCAGAGCCCAACAAATATAGAAG
AGGATACTTGCAGCCAACCATTGAACGTATGCAGGAGTTAGAGAAAGGAC
CTAAGGAGGTGAAGTGGTTTGCAACCCCATAGGAAGAACAACAATATTAA
CCAAACAGACCTCTTTTCTCCACATCTCCCAGAGACTAAACCACCAACCA
AAGTACTCCTGGAGGGACCCATGGCTCTTGCAGGGTATGTAACAGAGGAT
GGCCTTGTTGAACATCAATGGGAAGAGAAGCCTTTGGAACTCTGAAGGCT
TGGTTCCCCAGCCTAGCGGAATGACCAGGCAGGGGCAGAATTGGGCGTTT
GAGTGTTAGTGCACCCTCAGATAATCAGGAGGAAGAGGGATTGAATGTGG
GGATTTCAGGGAGGTTTCCAGGAAAGGTTATAACATCTGATAATGTAATT
ACAGAAAATGACTAACAAAAAAACAAGTAAACCTCCCACCACAAAACCTT
TCTATCAGTTCCTTATAACCTGAGGATATTAAATTGGTAATAGCTTGGAT
TTTTTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_h22.b1 MSMg01no065_h22.b1 CHROMAT_FILE:
MSMg01no065_h22.b1 PHD_FILE: MSMg01no065_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:01 2005
         (370 letters)



>mm_chr3_43319048_43319817
          Length = 770

 Score =  648 bits (335), Expect = 0.0
 Identities = 359/367 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcaacaaagattgctcaaattcattcatcttgaaacacttttcaatgtcttgaagc 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaacaaagattgatcaaattcattcatcttgaaacacttttcaatgtcttgaagc 263

                                                                       
Query: 64  agcaggcttgataaaaatgtgaaatagcttcttaaagactcagctgcaatgtgattcatg 123
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcaggcttgttaaaaatgtgaaatagcttcttaaagactcagctgcaatgtgattcatg 323

                                                                       
Query: 124 tgaaaatgttttcagtgctgtggcaatgtttcttcaagccatattggtgtgaaaatggca 183
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 tgaaaatgttttcagcgctgtggcaatgtttcttcaagccatattggtgtgaatatggca 383

                                                                       
Query: 184 agactcccattcactgatacttaacacaaccttctctgaaacgttcagttcctcctgcat 243
           |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 384 agactcccattcactgatacttaacacaacattctctaaaacgttcagttcctcctgcat 443

                                                                       
Query: 244 gaaatttaatactcactgatctgtaggtattaatttcagagaaataggtacttcagtaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaaatttaatactcactgatctgtaggtattaatttcagagaaataggtacttcagtaga 503

                                                                       
Query: 304 aaatagtgataccattgagcttgaagttaagagcgataactgggtcctttccggtccacg 363
           ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 504 aaatagtgataccattgagcttgaagttaagagtgataactgggtcctttctggtccacg 563

                  
Query: 364 ccagcac 370
           |||||||
Sbjct: 564 ccagcac 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)