BAC Information

Click to search

BAC

Clone NameMSMg01-065L12
Chromosome3 (Build37)
Map Location 14,757,308 - 14,901,548
singlet/doubletdoublet
Overlap geneCar1, LOC100041785, Car3, Car2
Upstream gene0710005M24Rik, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507
Downstream geneEG634323, LOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065L12.T7 (MSMg01no065_l12.b1)MSMg01-065L12.TJ (MSMg01no065_l12.g1)
ACCAG290861AG290862
length694689
length of high quality
(start - end)
191 (320 - 510)532 (67 - 598)
definitionCHROMAT_FILE: MSMg01no065_l12.b1 PHD_FILE: MSMg01no065_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:18 2005CHROMAT_FILE: MSMg01no065_l12.g1 PHD_FILE: MSMg01no065_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,901,361 - 14,901,548)(14,757,308 - 14,757,839)
sequence
AATTTGCGGCGCTAAACGACTCCTANNATGCCGAGTTGCCGCGGAATTCT
CTATGTTTCAGAAAGCAGGTCTCTGGTCCAAGTACATTTCTGAGGGTTGA
CTTTGGGTCATGAGGCATACAGACTTCAAAGATGTTAGGATCTGGCAATG
TGGGAGATGAAGAGAGAGCCAGTGACTGTTTGGGAACAAACACTGGAAAG
TTCTTTTCTTGGCAGGCAGTGTTTTCTGTCAAACAGGCCCGAACCATGTG
CTAAGAACTGAGGTCCGTATCTTCTTCAAGAAGCAACCTTCCCATCAAAG
ACACACGTGTTATATTTTAAACTCTCAGCATCTCTACCCTTGCCTAGAGA
GTGCAAGGTTATGTGAACTGTGCAAAACATTTTTCATATGTAACCTTGCA
CCTCTGTCAGGACGAATGCTCTTCATTCCTAATCCTTCTCTGATGTCTGA
GGTAAGGCTTCACTTACTGATGTCATTCCCTGAGGTTCTACAGAATATCC
CTTATTGATGAGCAGGAGGGGCAATTTGCAACCTGAAGCCAGTATGACAG
GCCACAGCATGGAAATTGAGCAGATTTTAATTTGTGGAAAATGCATCTTT
TAGTTTCAGAACCTTCGATCAGCTCACTTTTGTCTCGTTCTATAAAACAG
TCTACTTTACTAAAAGCAATGAAGATGTCTGGAAATTTACCTTA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTTGAAATCTTTTGATGGGTGGTGATAATACA
GAGTGAGTGACGGTTTTGTCCTTCAATGTGACGAATCTGATTTAACTTAA
AAGGACTACTGTTTTGTTTTTTCTTTGCTTTATTTGACCCTGTGTAACCT
TTCAAAACTGATTAGGAGCAGATTTACAAAACATAGCCTGAACTTGAACT
GGGAATTTGGCAGGGGTGTTGTGGTATGTGTTATATTTTCTTGTCTCTTT
AAAAGTCTTTCTTATTCATACTTATTATATGTATTGTCTCTTCACAATTT
GGCCAAATGGACTATAATCCAAATTCAATTATGATGGTTTCTAAAAATGG
TGCCTTAAATGAAGGGTATGAGAAGATGAACTTTGACAAGTCGGACTCCA
CATCCGGTCAACCAAACCAGTGCTTGTGCTCTGGCTCCAGTATCTGTTTC
TGTATAGTTATAGACTTATTTTTCCATATACGCATACACATGTGTAAGTA
GAGGCCTGAAGCTGATGTTTGCTATCTTTGTGATTGTTCTTCGCTATATG
TATTGAAGTATGGTATCTCACTAGATCAAGAGCTCACCATACAGCTTGCT
CAAGGGATGTCTCTCTGCCTTCTGAATGTTGCGATCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_l12.b1 MSMg01no065_l12.b1 CHROMAT_FILE:
MSMg01no065_l12.b1 PHD_FILE: MSMg01no065_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:18 2005
         (191 letters)



>mm_chr3_14901161_14901751
          Length = 591

 Score =  348 bits (180), Expect = e-100
 Identities = 186/188 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactctcagcatctctacccttgcctagagagtgcaaggttatgtgaactgtgcaaaaca 60
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 388 aactctcagcatctctgcccttgcctagagagtgcaaggctatgtgaactgtgcaaaaca 329

                                                                       
Query: 61  tttttcatatgtaaccttgcacctctgtcaggacgaatgctcttcattcctaatccttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttttcatatgtaaccttgcacctctgtcaggacgaatgctcttcattcctaatccttct 269

                                                                       
Query: 121 ctgatgtctgaggtaaggcttcacttactgatgtcattccctgaggttctacagaatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctgatgtctgaggtaaggcttcacttactgatgtcattccctgaggttctacagaatatc 209

                   
Query: 181 ccttattg 188
           ||||||||
Sbjct: 208 ccttattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no065_l12.g1 MSMg01no065_l12.g1 CHROMAT_FILE:
MSMg01no065_l12.g1 PHD_FILE: MSMg01no065_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:18 2005
         (532 letters)



>mm_chr3_14757108_14758039
          Length = 932

 Score =  982 bits (508), Expect = 0.0
 Identities = 526/532 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttgaaatcttttgatgggtggtgataatacagagtgagtgacggttttgtccttcaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tttttgaaatcttttgatgggtggtgataatacagagtgagtgacgattttgtccttcaa 260

                                                                       
Query: 61  tgtgacgaatctgatttaacttaaaaggactactgttttgttttttctttgctttatttg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgatgaatctgatttaacttaaaaggactactgttttgttttttctttgctttatttg 320

                                                                       
Query: 121 accctgtgtaacctttcaaaactgattaggagcagatttacaaaacatagcctgaacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accctgtgtaacctttcaaaactgattaggagcagatttacaaaacatagcctgaacttg 380

                                                                       
Query: 181 aactgggaatttggcaggggtgttgtggtatgtgttatattttcttgtctctttaaaagt 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactgggaatttggcaggggtggtgtggtatgtgttatattttcttgtctctttaaaagt 440

                                                                       
Query: 241 ctttcttattcatacttattatatgtattgtctcttcacaatttggccaaatggactata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttcttattcatacttattatatgtattgtctcttcacaatttggccaaatggactata 500

                                                                       
Query: 301 atccaaattcaattatgatggtttctaaaaatggtgccttaaatgaagggtatgagaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccaaattcaattatgatggtttctaaaaatggtgccttaaatgaagggtatgagaaga 560

                                                                       
Query: 361 tgaactttgacaagtcggactccacatccggtcaaccaaaccagtgcttgtgctctggct 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tgaactttgacaagtcggactccacatccggtcaaccaaaccagtacttgtgctctggct 620

                                                                       
Query: 421 ccagtatctgtttctgtatagttatagacttatttttccatatacgcatacacatgtgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagtatctgtttctgtatagttatagacttatttttccatatacgcatacacatgtgta 680

                                                               
Query: 481 agtagaggcctgaagctgatgtttgctatctttgtgattgttcttcgctata 532
           ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 agtggaggcctgaagctgatgtttgctatctttgtggttgttcttcgctata 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)