BAC Information

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BAC

Clone NameMSMg01-065M01
Chromosome3 (Build37)
Map Location 14,383,195 - 14,503,459
singlet/doubletdoublet
Overlap geneLOC668062, Slc7a12
Upstream geneLOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882, EG622229
Downstream geneLOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1, LOC668101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065M01.T7 (MSMg01no065_m01.b1)MSMg01-065M01.TJ (MSMg01no065_m01.g1)
ACCAG290887AG290888
length697686
length of high quality
(start - end)
461 (43 - 503)503 (70 - 572)
definitionCHROMAT_FILE: MSMg01no065_m01.b1 PHD_FILE: MSMg01no065_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:21 2005CHROMAT_FILE: MSMg01no065_m01.g1 PHD_FILE: MSMg01no065_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:21 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(14,383,195 - 14,383,652)(14,502,957 - 14,503,459)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTAGGATCTTCCTTGCCCATCAAAGAGGGAACTTGATGCCTAAGGAG
GTCAGGCAAACTCTAGACTTTGGGGTCCTCTGACATGGGTTGCTCTCCAT
TCCTAAATGAAAAAAAAAATTCACTATTTCCACACTCAAAGGCAAGACGC
CAGAGAAAGAGCTCCTTCTGATGGCCCCACAATCCTATGTGCACCTCCCT
GCCTCTCATGGGGACTTCCCAGACTGAGATGCACCAAGAATCTCAGACTC
CTACCCAGAGGAAACTCTCTGGGAGCCAATAAACCACAACCTTTTCTAGC
CCAATAAACCCAGCTTTTCCTGCCTACACTGCTGGTTTGCTCTACTGGGC
TCCAATGGCATGGGCTCAGGTGTCCTGGCCAATAGAGGGTGGACATTCAG
CCTAGAAACAGAGGTCGATGGGGGTGAGGTGTGGAGTGAGGGACCTGGTC
TCTGGAAAGGGGTGACTAGACTGACGTCTCCCAAGGTAATGGTATCCAAT
GCCACGCAGGAGGAAGCCCTTATTGTGGAAGGAGTTCAAGTAGACTCCTA
AACCAAAAGAAGCCAGATACCCAAACCCCAGTCATTAATGATGTACAGGC
ACGTCTGAAACGAAAAAAAATCTTGGAGGAGTCCAAAGGCCTCTGGT
TTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAATAATTTATTGAATATTTGCTATTCATAT
ATACTCCTGATGAATTATTCATTTCAATAATTTGTAGTGCTTTACTACAG
TTTGTTGAATTTTGATGCCTTATATCAATATCTAAATAGTCACACCAGCT
GGTTTTCAACTTCCCTTTGTTCAATAAGGTTCCGTGTACTCTTTACTAAT
TTATAGGCAATTTTGCTATTGAGATATATTTTTTAATGATGCCAAGCAGC
TAGATATTATTTCTCATCTGTTAAACTAGTCTTTTTCCCTCTTTTGGTGA
TTTGAAGCTGTTTGCATTTGATTTAGCATTAGGTATGGCTTAAAACTTAA
ATTTTTGGTTTATTTTTCTGGTTGTCTGGATTATTGTGCTTTCTTCTGTC
TCTTCTGTTTGTATGAAGAGTTTACTTGTTAACCATGTTAGTAATGATGC
ATTCCTTTCTATTTCTTCTTTGTGCATACATTCCCCCCATGAAGTATATT
CTTTCTGGTGGTTTCATGATAGAGATAGTCTTTCTTCATTTGTTAACTAT
AGCATTCCTTTAAGTATATTCCCCACAGATAGTTTGATGAATTGTCTTGA
ATTACCCTTATTGCCTCATTAGTTTTAATAAAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_m01.b1 MSMg01no065_m01.b1 CHROMAT_FILE:
MSMg01no065_m01.b1 PHD_FILE: MSMg01no065_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:21 2005
         (461 letters)



>mm_chr3_14382992_14383852
          Length = 861

 Score =  839 bits (434), Expect = 0.0
 Identities = 452/458 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattaggatcttccttgcccatcaaagagggaacttgatgcctaaggaggtcag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattaggatcttccttgcccatcaaagagggaacttgatgcctaaggaggtcag 263

                                                                       
Query: 64  gcaaactctagactttggggtcctctgacatgggttgctctccattcctaaatgaaaaaa 123
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaaactctagactttggggtactctgacatgggttgctctccattcctaaatgaaaaaa 323

                                                                       
Query: 124 aaaattcactatttccacactcaaaggcaagacgccagagaaagagctccttctgatggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 aaaattcactatttccacactcaaaggcaagacgccagagaaagagctctttctgatggc 383

                                                                       
Query: 184 cccacaatcctatgtgcacctccctgcctctcatggggacttcccagactgagatgcacc 243
           |||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 cccacaattctatctgcacctccctgcctctcatggggacttctcagactgagatgcacc 443

                                                                       
Query: 244 aagaatctcagactcctacccagaggaaactctctgggagccaataaaccacaacctttt 303
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 aagaatctcagactcctacccagaggaaactctctggaagccaataaaccacaacctttt 503

                                                                       
Query: 304 ctagcccaataaacccagcttttcctgcctacactgctggtttgctctactgggctccaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctagcccaataaacccagcttttcctgcctacactgctggtttgctctactgggctccaa 563

                                                                       
Query: 364 tggcatgggctcaggtgtcctggccaatagagggtggacattcagcctagaaacagaggt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggcatgggctcaggtgtcctggccaatagagggtggacattcagcctagaaacagaggt 623

                                                 
Query: 424 cgatgggggtgaggtgtggagtgagggacctggtctct 461
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgatgggggtgaggtgtggagtgagggacctggtctct 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no065_m01.g1 MSMg01no065_m01.g1 CHROMAT_FILE:
MSMg01no065_m01.g1 PHD_FILE: MSMg01no065_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:21 2005
         (503 letters)



>mm_chr3_14502757_14503659
          Length = 903

 Score =  949 bits (491), Expect = 0.0
 Identities = 500/503 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caataatttattgaatatttgctattcatatatactcctgatgaattattcatttcaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 caataatttattgaatatttgctattcatatatactcctgatgaattattcatttcaata 644

                                                                       
Query: 61  atttgtagtgctttactacagtttgttgaattttgatgccttatatcaatatctaaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atttgtagtgctttactacagtttgttgaattttgatgccttatatcaatatctaaatag 584

                                                                       
Query: 121 tcacaccagctggttttcaacttccctttgttcaataaggttccgtgtactctttactaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 583 tcacaccagctggttttcaacttccctttgttcaataaggttccgtgtactttttactaa 524

                                                                       
Query: 181 tttataggcaattttgctattgagatatattttttaatgatgccaagcagctagatatta 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 523 tttataggcaattttgctattgagatatattttttaatgatgtcaagcagctagatatta 464

                                                                       
Query: 241 tttctcatctgttaaactagtctttttccctcttttggtgatttgaagctgtttgcattt 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 463 tttctcatctgttaaactagtcttttcccctcttttggtgatttgaagctgtttgcattt 404

                                                                       
Query: 301 gatttagcattaggtatggcttaaaacttaaatttttggtttatttttctggttgtctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gatttagcattaggtatggcttaaaacttaaatttttggtttatttttctggttgtctgg 344

                                                                       
Query: 361 attattgtgctttcttctgtctcttctgtttgtatgaagagtttacttgttaaccatgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 attattgtgctttcttctgtctcttctgtttgtatgaagagtttacttgttaaccatgtt 284

                                                                       
Query: 421 agtaatgatgcattcctttctatttcttctttgtgcatacattccccccatgaagtatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agtaatgatgcattcctttctatttcttctttgtgcatacattccccccatgaagtatat 224

                                  
Query: 481 tctttctggtggtttcatgatag 503
           |||||||||||||||||||||||
Sbjct: 223 tctttctggtggtttcatgatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)