Query= MSMg01no065_p05.b1 MSMg01no065_p05.b1 CHROMAT_FILE:
MSMg01no065_p05.b1 PHD_FILE: MSMg01no065_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:36 2005
(246 letters)
>mm_chr3_84756977_84757622
Length = 646
Score = 458 bits (237), Expect = e-133
Identities = 243/245 (99%)
Strand = Plus / Plus
Query: 2 aaatattttattcattgaaagattctagatggaaataaagtttgcttttactggcaatta 61
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 202 aaatattttattcattgaaagattctagatggaaataaagtttgcttttagtggcaatta 261
Query: 62 gatgtcatttgtaccagcatatttacaaggcgttctgggaagttctgagagccagcatta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gatgtcatttgtaccagcatatttacaaggcgttctgggaagttctgagagccagcatta 321
Query: 122 ctgacttaattcagatgagtgtcagagactcccataatgatcaggaaaatcatctgcgaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctgacttaattcagatgagtgtcagagactcccataatgatcaggaaaatcatctgcgaa 381
Query: 182 agttaccaagctctgtactggctgcccttcctgatggattcatttgtatgtaggtacatg 241
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 382 agttaccaagctctgtactggctgcccttcctgatggattcatttgtgtgtaggtacatg 441
Query: 242 tctga 246
|||||
Sbjct: 442 tctga 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no065_p05.g1 MSMg01no065_p05.g1 CHROMAT_FILE:
MSMg01no065_p05.g1 PHD_FILE: MSMg01no065_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:36 2005
(342 letters)
>mm_chr3_84908618_84909359
Length = 742
Score = 478 bits (247), Expect = e-139
Identities = 287/319 (89%), Gaps = 30/319 (9%)
Strand = Plus / Minus
Query: 52 gagtcattttgttcaacactaatctgttcagccatgtcaaacctttccacactacaacgc 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gagtcattttgttcaacactaatctgttcagccatgtcaaacctttccacactacaacgc 683
Query: 112 aacaatttcatctacaaagctcacacttgagaaccacacaattgaa----------tctc 161
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 682 aacaatttcatctacaaagctcacacttgagaaccacacaattgaatctctctctctctc 623
Query: 162 tgtctc--------------------tctctctctctgttagtctccatctccctctcct 201
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 622 tgtctctctctctctctctctctctgtctctctctctgttagtctccatctccctctcct 563
Query: 202 ctcccttccccctctccctctcacttgcacactaaacaactaatttagtgtttacacaaa 261
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctccctcccccctctccctctcacttgcacactaaacaactaatttagtgtttacacaaa 503
Query: 262 tggaaacaaacttataaagcggtcaatgatgttagttatgattcacattattgttatagg 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tggaaacaaacttataaagcggtcaatgatgttagttatgattcacattattgttatagt 443
Query: 322 gttatttcatatcttccta 340
|||||||||||||||||||
Sbjct: 442 gttatttcatatcttccta 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
