BAC Information

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BAC

Clone NameMSMg01-066N20
Chromosome3 (Build37)
Map Location 30,556,554 - 30,556,867
singlet/doubletsinglet
Overlap gene4930558O21Rik
Upstream gene6130401L20Rik, LOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34
Downstream geneE230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14, LOC625125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066N20.T7 (MSMg01no066_n20.b1)MSMg01-066N20.TJ (MSMg01no066_n20.g1)
ACCAG291737AG291738
length685755
length of high quality
(start - end)
481 (56 - 536)316 (98 - 413)
definitionCHROMAT_FILE: MSMg01no066_n20.b1 PHD_FILE: MSMg01no066_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:48 2005CHROMAT_FILE: MSMg01no066_n20.g1 PHD_FILE: MSMg01no066_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTAATAAAAATGATAGTCAGGCATGGTGGTGCATGCCTTTAATCT
CAGCACTAAGGAGGCAGAGGCAGATAAATCCCTGAGGTCAAGGCCAGCCT
AGTCTACATAATTCCAGGGCAGCCAGGCCCACACAGAAACCCTGTCACAA
AAACAATAAACAAAATGACAGAAACCAAAACCCCATAAAATCAAATAAAT
ATGATGAAAAATACCACTGAAAAACTGTAATAACTAGCACAACTGTCCTC
TGATTAGCTCAACCAGTAGTCAATGGGAACAGATGCAGAACTCACAGCCA
AACTTAGGATGAGCTTGGAGAGTCTTGTAGAAGATTGGGAGGAAGAACTG
AGGGACCCAAAGGCAATAGGGACTCCACAAGAAGACCTACAGAGTCAACT
AACTTGGACCATTGGGGGCTCTGAGACTGAATCACTAACCAAAGAGCAAG
CATGGTCTGGACGCTAAGTACCCCCACCCTGCATTTATGTAGCAGATGTG
CAGCTTGGTCTTCATGCAGGTCCCCTAACAACTGGAGTAGGGCCCGTTCC
AGAATCTGTTGCTTGCCTAAGGACCTCATTCCTCTCACTTGAGCTGGCTG
CCTTGCTGGCCCCAGTGGTAGAAAATGCCTCTAGC
CCTTCCCCCANNCCCCCCNCCCTCACCACCCATNCCACTCAAACATTAGT
NNNNCCCTATAATTGCGGCGCTATACGACTCACTATATCCAGAAATCCGC
GGAATTCTCTGTATTGACAATGTGACCTGACTTTCTTGCTTAGCAATGGG
CAACCTGAGGATGGGTCCATAGTTCTCTACAGAATGCTAGCAAGATAAGT
TCATTCTCACCAGTGTCTTTGTGTGTGTATTCTTTAAGAACCATTTGTCC
GTGTTCCTCTTAATGATATAGCAGCTCTGGGCTGCCCATAATCTTTAGTC
ACAGCACTGAGCCATGGTGGATATAATACTGATAATTCTAATGTGACACA
GAGATCCATCCTATTCCTAATTCTCTATTACACTGTTTCCTGAACATGTC
ATATCATACCAATGATAGAAATGCAAAAAATATATTTTGTCTAATAAAGT
TGAAAATAGATAAATTGAATGCATTCAAACCAACTGTCTATGCATTTGGG
CTACTTTAACCGAGATGATTCGGGGTACTTAGTTGAAGAACTGTAGTCAT
TTCCTAAGATAGCTAGCTATTAAAAGGGAGTATATGGTACAATGCTGTAA
CGATTCAATACTTTTTCATGAGGCTCCAATAAAATTAAGCCCCAGCATTT
TCACTTTGCTGCATAAATGGACACTAAATCTAATGGGTTTTATTTAAAAC
AGCCGTATTTCTTGATATTAAATTTTTAAATTATTGCATCAGTTATTTCT
TCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_n20.g1 MSMg01no066_n20.g1 CHROMAT_FILE:
MSMg01no066_n20.g1 PHD_FILE: MSMg01no066_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:48 2005
         (316 letters)



>mm_chr3_30556351_30557067
          Length = 717

 Score =  553 bits (286), Expect = e-162
 Identities = 307/314 (97%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgtattgacaa-tgtgacctgactttcttgcttagcaatgggcaacctgag 62
           |||||||||||||  || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgtaaggaaaaatgtgacctgactttcttgcttagcaatgggcaacctgag 263

                                                                       
Query: 63  gatgggtccatagttctctacagaatgctagcaagataagttcattctcaccagtgtctt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gatgggtccatagttctctacagaatgctagcaagataagttcattctcaccagtgtctt 323

                                                                       
Query: 123 tgtgtgtgtattctttaagaaccatttgtccgtgttcctcttaatgatatagcagctctg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtgtgtgtattctttaagaaccatttgtccgtgttcctcttaatgatatagcagctctg 383

                                                                       
Query: 183 ggctgcccataatctttagtcacagcactgagccatggtggatataatactgataattct 242
           |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggctgcccataacctttagtcatagcactgagccatggtggatataatactgataattct 443

                                                                       
Query: 243 aatgtgacacagagatccatcctattcctaattctctattacactgtttcctgaacatgt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 444 aatgtgacacagagatccatcctattcctaattctctattacactgtttcctgaacatgc 503

                         
Query: 303 catatcataccaat 316
           ||||||||||||||
Sbjct: 504 catatcataccaat 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space:   217356
Effective search space used:   217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)