BAC Information

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BAC

Clone NameMSMg01-067F07
Chromosome3 (Build37)
Map Location 83,740,840 - 83,741,102
singlet/doubletsinglet
Overlap geneD930015E06Rik
Upstream geneFgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2
Downstream geneMnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067F07.T7 (MSMg01no067_f07.b1)MSMg01-067F07.TJ (MSMg01no067_f07.g1)
ACCAG292091AG292092
length694699
length of high quality
(start - end)
273 (48 - 320)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no067_f07.b1 PHD_FILE: MSMg01no067_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:24 2005CHROMAT_FILE: MSMg01no067_f07.g1 PHD_FILE: MSMg01no067_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTCTTGTACTCGCGCATAAGGCTTGTTTACTAGTTAGGTGCA
GTGGAAGCCAGTGCCATCTTATAATGCCGATTGCTCATGGCATGGCTCTC
CACATCTCCCCCTTTTTATTTTATTAAAATTTGAGGCTGGTCTAGGCCTC
TGCAGTCATGTCCATCTGCTGTGGCTCCTGTCTTAGGTCATTCCTCCAAT
GTCACAGCCTTTCCTGTCATAGGGTAACCCTATCGCCACTGGGTCCTGTG
TCTTAGGTTGGTCTGTACATGATTATAGTTGCTCGTCTCTGGATACCGCA
GTACTGTGTGATTTTTTCTGCCCCCCGCCCTACGGTGAACTCTATAAAAG
AGGCCAGCCAAAAAACAAATTAATAAAACTCAAAAAACTGCATGTGCTGA
GCAATGAACGTTGAGTCTCTTACATCCCAGTGCAATGTATCCACAAATCT
GTGGGACTCTTTATCATAGAACTCATATGCCATTTATGTCTTAAGCATGT
ATAGTCAAATTTCTCGTGATGCCCTTTGTTCAACGGTTGCTAGTTGTTGA
TCAATAACGATCTTGGCACGCTTTTTGTTGGGTTCTCAGCTTATATATTA
ATTCGAGCATACACACTATTCTACAGTAAATGGCGGCCGCTAAG
NAACGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCATAACCTTTTAGGCTTCAGA
CTGAACAACTAAGAACCACTTAAATCAATTTAAAACACCTAATAAACTGA
TTTAAACTGAAGTCCCAATAAACATGTACTACAAGTTCACCTGTACTTTC
TATGGTAAGCAAATGCTATTTTCCAGCTTTGGGGACAGGAGACAGGAGCC
TCTGCCTGGAGACAGACAGGAGCCTCTGCCTGGTAACGCAGGCCCCTGGG
CTTGCTCCTCAGCAGCACATATTATGGAAACTGATCAATCTTCTGATGAT
GACGTATTTTTTTTTTTTATCCCCCCCCCCCCCACAAAAATAATCTCTCT
AAATCAAGATTTCACATCTAAGCAAAGAAACAAAATAAGATTGGTTTGGG
AGTATCTTACATTTCTTATACAGTCTTAAATAATAACCTATCACAGGGTT
AACTATGCACCTCTTATTGCTAAATGGCACTTCTGCACATGGCATTGTTT
CACAATATTCTGGTTGGGACCGACAAAATCTGTTCAGGCTATGTTTAAAC
GGCACCTGTGTTTGTACTCATCAAATCATTGTTTGATTTCCCTTAACACA
TTGTCCTTTTTCACCTATTTTTCTCATTAAACCCTTTTCTTTCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_f07.g1 MSMg01no067_f07.g1 CHROMAT_FILE:
MSMg01no067_f07.g1 PHD_FILE: MSMg01no067_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:24 2005
         (239 letters)



>mm_chr3_83740640_83741278
          Length = 639

 Score =  408 bits (211), Expect = e-118
 Identities = 239/263 (90%), Gaps = 24/263 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcataaccttttaggcttcagactgaacaactaagaaccacttaaatcaatttaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcataaccttttaggcttcagactgaacaactaagaaccacttaaatcaatttaaaac 260

                                                                       
Query: 61  acctaataaactgatttaaactgaagtcccaataaacatgtactacaagttcacctgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctaataaactgatttaaactgaagtcccaataaacatgtactacaagttcacctgtac 320

                                                                       
Query: 121 tttctatggtaagcaaatgctattttccagctttggggacaggagacaggagcctctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctatggtaagcaaatgctattttccagctttggggacaggagacaggagcctctgcc 380

                                                                       
Query: 181 tggagacagacaggagcctctgcctgg---------------t---------aacgcagg 216
           |||||||||||||||||||||||||||               |         ||||||||
Sbjct: 381 tggagacagacaggagcctctgcctggagacagacaggagcctctgcctggcaacgcagg 440

                                  
Query: 217 cccctgggcttgctcctcagcag 239
           |||||||||||||||||||||||
Sbjct: 441 cccctgggcttgctcctcagcag 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)