BAC Information

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BAC

Clone NameMSMg01-067J16
Chromosome3 (Build37)
Map Location 54,074,286 - 54,074,429
singlet/doubletsinglet
Overlap geneTrpc4
Upstream geneLOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937
Downstream genePostn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067J16.T7 (MSMg01no067_j16.b1)MSMg01-067J16.TJ (MSMg01no067_j16.g1)
ACCAG292300AG292301
length666678
length of high quality
(start - end)
76 (44 - 119)144 (76 - 219)
definitionCHROMAT_FILE: MSMg01no067_j16.b1 PHD_FILE: MSMg01no067_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:45 2005CHROMAT_FILE: MSMg01no067_j16.g1 PHD_FILE: MSMg01no067_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCTGAGACAATTATTAAATTAAATCATAAAGCAAAATAACACCAAAT
AAGGTTAAATTTAATAAGGCCACTGGGCAAGTCCATGCCTACATTGAACA
AAACACATCCTAGAGCAAACTGAGCCCAACAGTTTCCATGGGAGAAAGCC
TGTGGTATAACAAGACCTCATCACCAACAGCATTAACCAAGCACTGGGTC
TCAGTAAGTGAGGTCCTCGATAGCCTTTCAGCTGCTCAGGCCTGTGTGCG
TTGCTGACACCATCTTATCTCCTCATTCTGAACATAATATTATGCCAGGG
TATGTTTTTTTTTTGCTGCCCCCCCCCCTCAGTGCTTTATTGTTTATGTG
TAATTATAGGCCTGCCCCACCAAAAAAAATAAGGAGATCCTTGTGCGGTG
GTGAAAGAACCTGGATATGCCTGATGACTCGTACCGCATATCCACAGGAT
TAGATTAACCCACCGATCCCATTGATACATTTACCTTGAAAATACATTGC
TTACTCTATCTTTTTTTCTCATCTCATATTGTTTTACCTAATTTATGTTT
CTCCTCTTTACTATTAGTTTTGTTTGATACTCTTTCCCCTCATAAATCCC
TCCTCTTTTTCTCTCA
GCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTACTGGGGAAAAATGACCCCTGT
CAGGTTATGACAGCACATGTCAAATTTAACACCCAAAGACTGATCCCTAG
AGACCTTCTGAGAATATTGGTACCTAGTGTAGATGGGAAGGGGACAAATA
CTGAAAAGCAAACTAGACATCAAAACATAAAAAAGGTTAAATGGTTGGAT
GGTGCTTAAATTGGTTTTCCTTAGTTAGAAATTACTATAATAAATGTAGT
TGCATGACATTGATGCTAATTAGGCTGAAAATTTCAATGCACATTCTGCT
GCGGATGTTTCTGTTTTTCCACTCCCCCCGCCTATATTAAACCGAGGGAA
TGGTTTGTTTTCCAGAGACCACACAAAAAAAAAAAGTTGGATTGCGGGGC
CAGAATCAAAGGGCCAGCAGGTGCTTGTTAATACAACAAATCCCAGAACC
TCCAAAGAAAGAACCTTGTTTCTCTGTGAGACACTGTGCCAGAAATGAGA
GAGATAGGATTTCAGGAAGCAGGAAGTTTCTAGAACACCATCTCTGCACT
CATGTGCTCCATTCCCTGCCTCCTCGCACCTTTCCTCAGGTATAATGCGA
CTGAACAGCGCATGAAGTTTATCAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_j16.g1 MSMg01no067_j16.g1 CHROMAT_FILE:
MSMg01no067_j16.g1 PHD_FILE: MSMg01no067_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:45 2005
         (144 letters)



>mm_chr3_54074086_54074629
          Length = 544

 Score =  271 bits (140), Expect = 1e-77
 Identities = 143/144 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttactggggaaaaatgacccctgtcaggttatgacagcacatgtcaaatttaacaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttactggggaaaaatgacccctgtcaggttatgacagcacatgtcaaatttaacaccca 260

                                                                       
Query: 61  aagactgatccctagagaccttctgagaatattggtacctagtgtagatgggaaggggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagactgatccctagagaccttctgagaatattggtacctagtgtagatgggaaggggac 320

                                   
Query: 121 aaatactgaaaagcaaactagaca 144
           | ||||||||||||||||||||||
Sbjct: 321 acatactgaaaagcaaactagaca 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)