BAC Information

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BAC

Clone NameMSMg01-067K05
Chromosome3 (Build37)
Map Location 24,121,931 - 24,122,208
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC100039548
Downstream geneEG665189, LOC100039592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067K05.T7 (MSMg01no067_k05.b1)MSMg01-067K05.TJ (MSMg01no067_k05.g1)
ACCAG292325AG292326
length705715
length of high quality
(start - end)
291 (37 - 327)273 (70 - 342)
definitionCHROMAT_FILE: MSMg01no067_k05.b1 PHD_FILE: MSMg01no067_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:48 2005CHROMAT_FILE: MSMg01no067_k05.g1 PHD_FILE: MSMg01no067_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCT
AAAAAGCCATTAACTTCTTTTTTTATTTCTTCCTTGACCAGTTATCACTG
AGTAGAGTGTTGTTCACCTTCCATGTATACGTGTGCTTTCCTTTCTTTTT
GTTGGTGCTTAAGACCTAAGTTCGTGGTGATCTGATAGGATGCTTGGGAT
TATTACAGTCTTCTTGTATCTGTTGAGGCCTGTTTTGATACCACCTATAT
GGTCAAATTGGAAAAGGGACTGTGAAGTGCTGAGAAGAAAGTATATTCTT
TTGCTTTAGGATGATATGGTCTATAGGTATCTGTTAGATGCATTTGGTTC
ATATTTTTTTTTACTTCCACTGCGCCTCTGTTTAGTTTGTTTCTACGATC
TGTCCATTGTGGAGAGTACATGTTGAAGTCCCCGTCTATTACTGTGTGGG
GTACAATGTGTGTTTGGGACTTTAGAAAAGTTCCTTAACGAAACCCTTTG
CTCTGTAGCATAGATGGTCAGAATTAAGAGTTCTCCTGGGGAGATTTTTA
CTTAACCCCCCTGGGGTTTCCTTCCTTAACTTTTTTGGTAACTTTTGGCC
GGCCAGCCCATTTAATCTCTTATTAGAGGGGCTACTTCGGCGTTCGCTCT
TTGGAACCATTTGTCTTGAAAATATTCTCTCCGGCTCTGCAACTTTGATG
TACTG
TGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTTTCAAGGTGATACTCTGCCCATTCAAAA
TCTTACAGAACTCTTTGACCACTGACTTGATATCCCCACACCTCTAATTG
CCTCACAGGTTCCATCACAGCAAGGACACTACAAGCCAAGATTTAGCCTT
TAAAATATGTGCTAGCCTAAAGGTGACCTCGACTATGTCCTTTTACCTAT
TTAGTTTTCCTATCACAGCTCATTGTGCTGCTTTATTTACCTGCCATCTC
CTCTCCTGTTAACTTATTTTTTTTTAATAGTTTGAAATGCAAGTCTGTAA
AATAATTTTTTTTTTACCCCCCCCCCCCCCCACTATGCTCTGACAGGAAA
GAGTTTACCCTCCATGGCATACTTCAAAAACATTTGTCAGCTATTATTTT
TGTGTCTGATTTTATTTTCTCCCATAGGTTTTGTTCCTACTCTAGAACAA
GATTATGAATGCCCTTCCTTTATTTCAGGACTCCTTTATTCTCTGCTTTT
CCTAAGAGTGATATATACTGCGGGTTGCCCAACAACAACTTCCAACTTCT
TTTTTAGTTTGTATTCCATGATACCTTTTTTTGAATCTGGTTTAAAAAGA
TCTGATGTAATCTGGACTAGACTATTCGAATCCACCTTTCCATTCCTCTT
TACCTTGACTTAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_k05.g1 MSMg01no067_k05.g1 CHROMAT_FILE:
MSMg01no067_k05.g1 PHD_FILE: MSMg01no067_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:48 2005
         (273 letters)



>mm_chr3_24121753_24122425
          Length = 673

 Score =  464 bits (240), Expect = e-135
 Identities = 267/278 (96%), Gaps = 5/278 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttcaaggtgatactctgcccattcaaaatcttacagaactctttgaccactgacttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 456 attttcaaggtgatactctgcccattcaaaatcttacagaactctttgaatactgacttg 397

                                                                       
Query: 61  atatccccacacctctaattgcctcacaggttccatcacagcaaggacactacaagccaa 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 396 atatccccacacctctaattgcctcacaggttccatcagagcaaggacactacaagccaa 337

                                                                       
Query: 121 gatttagcctttaaaatatgtgctagcctaaaggtgacctcgactatgtccttttaccta 180
           ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 336 gatttagcctttaaaatatgtgctagcctgaaggtgacctagactatgtccttttaccta 277

                                                                       
Query: 181 tttagttttcctatcacagctcattgtgctgctttatttacctgccatctcctctcctgt 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tttagttttcctatcacagttcattgtgctgctttatttacctgccatctcctctcctgt 217

                                                 
Query: 241 taactta-ttttttttta----atagtttgaaatgcaa 273
           ||||||| ||||||||||    ||||||||||||||||
Sbjct: 216 taacttattttttttttattttatagtttgaaatgcaa 179


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)