Query= MSMg01no067_l19.b1 MSMg01no067_l19.b1 CHROMAT_FILE:
MSMg01no067_l19.b1 PHD_FILE: MSMg01no067_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:55 2005
(322 letters)
>mm_chr3_29579691_29580412
Length = 722
Score = 536 bits (277), Expect = e-157
Identities = 308/321 (95%), Gaps = 8/321 (2%)
Strand = Plus / Minus
Query: 6 gaattcacagttgcttcc-cagtttctgggttatgatatatcatctacatagtatatcta 64
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattcacagttgcttccaaagtttctgggttatgatatatcatctacatagtatatcta 463
Query: 65 tggggttctctacccaccccacccccaac---gtaacacatagtaaaacacaagaatttc 121
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 462 tggggttctctacccaccccaccc---actgtgtaacacatagtaaaacacaagaatttc 406
Query: 122 taagatattttattagcataatagaataaagaccttagaggataaattgttaataggaac 181
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 taagatatttcattagcataatagaataaagaccttagaggataaattgttaataggaac 346
Query: 182 atgtcctaaaatgagggtggaggacatggaaggcatcacaagcttccctgctcatcagcc 241
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 345 atgtcctaaaatga-agtggaggacatagaaggcatcacaagcttccctgctcatcagcc 287
Query: 242 atccatgccattgggagtcacttttctctttcctcttcattatataatcaaacagtgttc 301
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 286 atccatgccattgggagtcacttttctctttcctcttcattagataatcaaacagtgttc 227
Query: 302 cgtgatttcaacatggaattt 322
|||||||||||||||||||||
Sbjct: 226 cgtgatttcaacatggaattt 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_l19.g1 MSMg01no067_l19.g1 CHROMAT_FILE:
MSMg01no067_l19.g1 PHD_FILE: MSMg01no067_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:55 2005
(292 letters)
>mm_chr3_29500279_29500970
Length = 692
Score = 536 bits (277), Expect = e-157
Identities = 286/289 (98%)
Strand = Plus / Plus
Query: 1 agtaaaagaagaaatgcgcattaatttttatactaagcctggttaattgaccctcttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaaaagaagaaatgcgcattaatttttatactaagcctggttaattgaccctcttttc 260
Query: 61 tctatagagaaagctctgattcctaaaagttccattttaaaagtacttaagtcagggaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tctatagagaaagctctgattcctaaaagttccattttaaaagtacttaagtcaggaaga 320
Query: 121 agtctaatgtcaacctggccttatttataaaagaaaattatttaataatcttcatttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctaatgtcaacctggccttatttataaaagaaaattatttaataatcttcatttctc 380
Query: 181 attataactttcatgggattctgtggtaaaagacactcatttctttgtttgaaatgctgg 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attataacttccatgggattctgtggtaaaagacactcatttctttgtttgaaatgctgg 440
Query: 241 cttcctaagtgctgtatcacacaggtaagagaacaatgcattaaaatgc 289
|||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 cttcctaagtgctgtatcacacaggtaagagaacaatggattaaaatgc 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
