BAC Information

Click to search

BAC

Clone NameMSMg01-067M16
Chromosome3 (Build37)
Map Location 86,674,034 - 86,674,341
singlet/doubletsinglet
Overlap geneDclk2
Upstream geneGlt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319, EG625055
Downstream geneCd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067M16.T7 (MSMg01no067_m16.b1)MSMg01-067M16.TJ (MSMg01no067_m16.g1)
ACCAG292441AG292442
length705707
length of high quality
(start - end)
314 (42 - 355)333 (72 - 404)
definitionCHROMAT_FILE: MSMg01no067_m16.b1 PHD_FILE: MSMg01no067_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:00 2005CHROMAT_FILE: MSMg01no067_m16.g1 PHD_FILE: MSMg01no067_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATCCACGCTCCTTATGTAGAAAGGAATGCCAAGACCACAGGGAAGGCAG
TGGCCTCCAAAGCAGCACACAGGTCTACACTTTGGGTCACCCAAACACGA
AGCATGAAGCTCTTAAAATAACTTTACCCAGATGCCTCCTCAGGCCTGGG
AATCATTCTGTCCTCTGAGTTCTTTCTGTGAGTTGCCCTTTTCAGAAAGA
AGGTTGTAAAAATGAGGTACACAATGCTTTCCCTCCTCCTACATAGTTTG
GGAGTTTTGTGAGACCCATAGGGATAAACAACTCCTTTGGGAAGCTTTTT
TCATGTTATAGAACCGCCCCGCTGAAAACAAAACAAAAGAACAAGATAAA
AACTTAGGAGGCCCGATACCAGATGTCTCTGGGAGAGCCGATGGTAAGCA
AGGTAGTGGGTGCCAGGCTCTAGAGAGTCAACTCTTCCCTGGAAGCCTGG
GAGGCTGCTGGAGTCAGTATGGCTGTACATCCACAGTTCTGCTGCTGGGA
ACGGTAGGATTTGCAGCTTGGTCTCTCAGCTGTCCTTTACTTCATCTGCA
TAATGTTCCCAAATGTAACTCCCCATGACTTAATTAATTTCTAAGCTCAT
TACTGGTCCTTAATTCATCACACCACAAAGAGCAAGATGGTGTTTATTGA
ATATC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGAATAACTCTTTAGACTAAAGATAGAG
ATAAGCACAGTGAGGGGCCTGTAAAAAAAAAGTGAAGCTATAATTATTGA
AATATAAAGTACAACAAGGACACAAATAGCAAGCAAACAAAAACTTCAAA
ATGACTCTAGCCAATACAAACCTTTCACTAATAACTTTAAATGTTAATGG
CTTTAACTTTCCAATCAAAAGACACAGCTTGGCTGAATGGATTAAAAAGC
AAAATCCATTTTCTGTTGAACACAAAAAACTCATCTTAGAATTAGAGATT
GACACAATCTGAAAGCACAGGAAAAAAACCATCCCCTCAAATGGTATCAG
GAACAAAGCACCCGTTGCTCTTCTCTCACCATATAAAATAGACAAAGAGG
GATAATTCATTCTAATTAAAGGAATAATTAACCAAGAAGACGTTATTCAT
AGCCCTAAATATATATGCACCACATTCAGGTTTCATGAATAACCTCCTAC
TGAATTAAAGGCAGATTAACGTCAACCCATTGATAATAACCGATTTCAAT
ACCCCCCTTTCTCTAATGCACACATAGATCATTTGAGCAAACAATAACAA
AGGAAATAACACATCCGATGAACTTAACAGATATCATACACCATTGAGTG
CCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_m16.b1 MSMg01no067_m16.b1 CHROMAT_FILE:
MSMg01no067_m16.b1 PHD_FILE: MSMg01no067_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:00 2005
         (314 letters)



>mm_chr3_86673831_86674541
          Length = 711

 Score =  516 bits (267), Expect = e-151
 Identities = 300/313 (95%), Gaps = 7/313 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatcc-ac-gctccttatgtagaaaggaatgccaagaccacagggaaggcagtg 61
           ||||||||||| || | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 204 ggaattcatccaacag-tccttatgtagaaaggaatgccaggaccacagggaaggcagtg 262

                                                                       
Query: 62  gcctccaaagcagcacacaggtctacactttgggtcacccaaacacgaagcatgaagctc 121
           ||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 263 gcctccaaagcagcaaacaggtctacactttgggtcacccaaacgtgaagcatgaagctc 322

                                                                       
Query: 122 ttaaaataactttacccagatgcctcctcaggcctgggaatcattctgtcctctgagttc 181
           |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 323 ttaaaataactttacccagatgcctcctcaggcctgggaatcattctgt----tgagttc 378

                                                                       
Query: 182 tttctgtgagttgcccttttcagaaagaaggttgtaaaaatgaggtacacaatgctttcc 241
           ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 379 tttctgtgagttgcctttttcagaaagaaggttgtaaaattgaggtacacaatgctttcc 438

                                                                       
Query: 242 ctcctcctacatagtttgggagttttgtgagacccatagggataaacaactcctttggga 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctcctcctacatagtttgggagttttgtgagacccatagggataaacaactcctttggga 498

                        
Query: 302 agcttttttcatg 314
           |||||||||||||
Sbjct: 499 agcttttttcatg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 711
Length adjustment: 9
Effective length of query: 305
Effective length of database: 702
Effective search space:   214110
Effective search space used:   214110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)