BAC Information

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BAC

Clone NameMSMg01-067P05
Chromosome3 (Build37)
Map Location 13,196,451 - 13,196,760
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067P05.T7 (MSMg01no067_p05.b1)MSMg01-067P05.TJ (MSMg01no067_p05.g1)
ACCAG292562AG292563
length686689
length of high quality
(start - end)
314 (49 - 362)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no067_p05.b1 PHD_FILE: MSMg01no067_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:12 2005CHROMAT_FILE: MSMg01no067_p05.g1 PHD_FILE: MSMg01no067_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGTATATCCCTGGCTGTCCTGGAACTCACTTTGTAGACCA
GGCTAGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCTAGAGCTCT
AATCTTGCACTGCATACCAAGAATCTAAAAGCCAAACGTCTGAGGAAACA
AAAACCAAACAAAACAACAACAATACTTTTACATTTTCTTTATGAAGAAA
GTGATTCTAAAGCCTGCAAGAATTCAGAACTTAGGTGTCATGGAAAACAT
ATCATTTTGAGAGACTCAGTTTGTGTCAGAGTCCTCACAAATCCATCCTA
CCACAGTCAAACCTATTTACTTCCCTAACACCCGCCTGAGAATTCTTGTT
TTCAGAACCACCGTTTCTATTATGCCTTAAACAGACTAGGCTGTATTTTT
TTTTAAAAAAATGGTAATATCACACCCCTGAAATAACACATGGCAAATTA
TTTGCAAATAGTAGTTGGAGTAATAAGAACAGCACTCGGCTGCCTGTCAG
AGCACCTTGTGACACCAGTGTGAGAAGAAGGTCCAGGGATCAGTATATAA
CAGTGCTAAAAAAATGAAATACTCTATCATCGCTCAACTTCCGAATAATG
GATTTTTTTATACCATAACAAAGGCTCTTCATAATA
NATACGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTACAACCCCATGGGACAAGGAA
TAGTTGAACGTGCTCATCGCACCTCAAAGAATTGGCTTTTTAAAACAAAA
GAGGGGCAGCTATATCCCCCAAGGTCAGCAAAGGCCCACCTTGCCTTCAC
CTTATTTGTCCTAAATTTCTTGTACACCGATATCAAAGGCCAGTCTGCAG
CGGATCGCCACTGGCATCCAGTTACTTCTAATTCTTATGCATTGGTAAAA
TGGAAGGACCCCCTGACTAATGAATGGAAGGGTCCAGATCCAGTTCTAAT
TTGGGGTAGTTTATTTTTTTTTCCCCCCCTCCCCCAGATGAAGATGGACC
GCGTTGGCTGCTATAAAGATTATTTCGACAGAAGAATACAGATTCTGAGT
CTTCTGGTAAGTATCATTCTAAAGACTAAAATTCCTTTTGCGCTTAAAAT
TCACCTGATATTAAAAGCTCCCAAAGTTGTTCTCCAGCTATTCTCTGAGT
CATCTCCCTGACAGGAGTCCGTAGATTAGCCTCAGCTTTACAATTTGCTT
TTTTAATAAAGATTTGCGACTTCCTCATAATATCCTCTGCCTTCCTACTC
TCTCACCGTTCAAAATTTTGCCCCCTTTGTTTTTAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_p05.b1 MSMg01no067_p05.b1 CHROMAT_FILE:
MSMg01no067_p05.b1 PHD_FILE: MSMg01no067_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:12 2005
         (314 letters)



>mm_chr3_13196247_13196960
          Length = 714

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgtatatccctggctgtcctggaactcactttgtagaccaggctagcctcaa 64
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattctctgtatagccctggctgtcctggaactcactttgtagaccaggctggcctcaa 264

                                                                       
Query: 65  actcagaaatccacctgcctctgcctccctagagctctaatcttgcactgcataccaaga 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 actcagaaatccacctgcctctgcctccctagagctctgatcttgcactgcataccaaga 324

                                                                       
Query: 125 atctaaaagccaaacgtctgaggaaacaaaaaccaaacaaaacaacaacaatacttttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctaaaagccaaacgtctgaggaaacaaaaaccaaacaaaacaacaacaatacttttac 384

                                                                       
Query: 185 attttctttatgaagaaagtgattctaaagcctgcaagaattcagaacttaggtgtcatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attttctttatgaagaaagtgattctaaagcctgcaagaattcagaacttaggtgtcatg 444

                                                                       
Query: 245 gaaaacatatcattttgagagactcagtttgtgtcagagtcctcacaaatccatcctacc 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 gaaaacatatcattttgagagactcagtttgggtcagagtcctcacaaatccatcctacc 504

                     
Query: 305 acagtcaaac 314
           ||||||||||
Sbjct: 505 acagtcaaac 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)