BAC Information

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BAC

Clone NameMSMg01-068A13
Chromosome3 (Build37)
Map Location 26,734,432 - 26,734,713
singlet/doubletsinglet
Overlap geneSpata16
Upstream geneNlgn1, LOC229152
Downstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068A13.T7 (MSMg01no068_a13.b1)MSMg01-068A13.TJ (MSMg01no068_a13.g1)
ACCAG292624AG292625
length707712
length of high quality
(start - end)
320 (44 - 363)284 (80 - 363)
definitionCHROMAT_FILE: MSMg01no068_a13.b1 PHD_FILE: MSMg01no068_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:19 2005CHROMAT_FILE: MSMg01no068_a13.g1 PHD_FILE: MSMg01no068_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGACATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTTATG
AAGTCCCATTTGTCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCT
ATTCTGGAATTTTTCCCCTGTGCCCAAATCTTCGAAGCTTTCCCCCACTT
TCTCCTCTATATTTTTTCAGTGCCCCTCGCCCCTTTTTTTTTTAATCTTT
TTTTATTCTTTTTTTATTCTTTCTTTTTATTCTCTGGTTCTTAATAACCA
CTAATTTCTTACACTCAGCTAATCAGCATCAATTGTCCCAGTAGTCTTCT
CTTCTTGACTATAAAGCCAGAGACACACGGTCGAGGCTGCAAAGGTTCTG
CTGCCTGCTGGAGCTGCAATGTGCCCCCTTGTTTTATTTACATCATTACC
AGCTTTCTGTTTTCCAGTTCCTTCACACTGCCTAGCTTGGCTGTCCTGGA
GCTTGCTCTGTATCTTGACCTTGAACTCACAGATCTTTGTATCTCTGTCT
CCTGAAT
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGGCCAGATAATAAAGCCG
TGAGGCTTTTCAGGCCGCGGGCTCTGATGCTCTGTGGTGGGCTCCAGTGC
CATTGTTGGCAGCAAGAGGATGTGTGGGCCGTGCACACAGGATCGAGCAT
TACTGAAATTTCATTTGCACACAGTGGTACGCCAGCTATAAAGCACATAT
GACAGTGTTGCTCCCTGTGACAGTGGGAGACAGTGGAAGCACAAAACTAC
TAGAGCAGGGCCAGTGAGGCGAGTTGGTGGGTAAGGCGCTCACACCAACC
CTGACCACTTATATTTTTTCTCCACCCCCCCCACCTGCGGGAAGGAGAAA
CTCACTCGGTCTCCTGCAAGATCCTTACTGAAGAAAATAAGATGTGTCAG
TGCCCCGTAGCAAGGGTAAATGACATCTTGAGGAGGTGAGCATCAGTGGG
ATGCTTATGGAGAGAGATTCCTGGAAAGGGTGCCAGGTAGAAATTCCATA
GGCAGTAGCAGAGTATCCTGCCTGGCCTTTCCGCGGAATAGTAGTTTGCA
TAGGGCCTGCAACATAGTGAATAATCCAGAATCAATGTGGTCTAACGGGG
CTTGCAGAGATGGTTCTGTGCTTAACACCCCTTGTTGCTTTTGCCCCTAG
TCCTTCAATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_a13.g1 MSMg01no068_a13.g1 CHROMAT_FILE:
MSMg01no068_a13.g1 PHD_FILE: MSMg01no068_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:19 2005
         (284 letters)



>mm_chr3_26734232_26734915
          Length = 684

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccggccagataataaagccgtgaggcttttcaggccgcgggctctgatgctctgtggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccggccagataataaagccgtgaggcttttcaggccgcgggctctgatgctctgtggtg 260

                                                                       
Query: 61  ggctccagtgccattgttggcagcaagaggatgtgtgggccgtgcacacaggatcgagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ggctccagtgccattgttggcagcaagaggatgtgtgggccgtgcacacaggagcgagca 320

                                                                       
Query: 121 ttactgaaatttcatttgcacacagtggtacgccagctataaagcacatatgacagtgtt 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ttactgaaatttcatttgcacacagtggtacaccagctataaagcacatatgacagtgtt 380

                                                                       
Query: 181 gctccctgtgacagtgggagacagtggaagcacaaaactactagagcagggccagtgagg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gctccctgtgacagtgggagacagtggaagcacaaaactactagagcagggccagtaagg 440

                                                     
Query: 241 cgagttggtgggtaaggcgctcacaccaaccctgaccactta 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgagttggtgggtaaggcgctcacaccaaccctgaccactta 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)