Query= MSMg01no068_c19.b1 MSMg01no068_c19.b1 CHROMAT_FILE:
MSMg01no068_c19.b1 PHD_FILE: MSMg01no068_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:30 2005
(316 letters)
>mm_chr3_51171059_51171774
Length = 716
Score = 455 bits (235), Expect = e-132
Identities = 286/315 (90%), Gaps = 22/315 (6%)
Strand = Plus / Minus
Query: 5 gaattctttccttcc-taatatggatcctggggttgggggggaaactcaggtcatcgggc 63
||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 524 gaattctttccttccataatatggatcctcgggttgggggagaaactcaggtcatcgggc 465
Query: 64 ttagtgacaaggttctaacctacagaaccatctctccagccctgaggggtacacttttcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ttagtgacaaggttctaacctacagaaccatctctccagccctgaggggtacacttttcc 405
Query: 124 tctgctgcagcatacctttgctcaaactctaatcgttggggttttgtaaatatttcttta 183
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 404 tctgctgcagcatacctttgctcaaattctaatcgttggggttttgtaaatatttcttta 345
Query: 184 ttaatgtgtgtg--tgtgtgtgcgcgggcacatgctaagtgtatgaatgaataccatgtg 241
|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 344 ttaatgtgtgtgcgtgtgtgtgcgcg--cacatgctaagtgtatgtatgaataccatgtg 287
Query: 242 catttggtgtctgcataggccagaagaatgcattgggtccattgaactggagttacaagc 301
|||| ||||||||||| |||| ||||||||||||||||||||||
Sbjct: 286 cattcggtgtctgcat-----------------tgggcccattgaactggagttacaagc 244
Query: 302 agttgcgagctgcat 316
||||| |||||||||
Sbjct: 243 agttgtgagctgcat 229
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_c19.g1 MSMg01no068_c19.g1 CHROMAT_FILE:
MSMg01no068_c19.g1 PHD_FILE: MSMg01no068_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:31 2005
(298 letters)
>mm_chr3_51001253_51001950
Length = 698
Score = 549 bits (284), Expect = e-161
Identities = 293/296 (98%)
Strand = Plus / Plus
Query: 1 ccccctgcatttctgactggtcatctcctggggaattctctgtaactggaaatgatcccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccctgcatttctgactggtcatctcctggggaattctctgtaactggaaatgatcccg 260
Query: 61 gaaaaccaggaacagctgcattgtaggtactgatggcctctacagtccccagctgcaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaccaggaacagctgcattgtaggtactgatggcctctacagtccccagctgcaccc 320
Query: 121 agccctccaccgggccaccagggggtcccagaggggaggctggtccaaggcaaacatcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccctccaccgggccaccagggggtcccagaggggaggctggtccaaggcaaacatcat 380
Query: 181 ggggccctggcttccattttcagagggactgtgttaatcaccagtaaagcacactgcgct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ggggccctggcttccattttcagagggactgtgttaatcaccagtaaagcacactgcgtt 440
Query: 241 ttttacagaaattatattactgaaaacaattagtcttgattttttttttctttttt 296
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttacagaaaggatattactgaaaacaattagtcttgattttttttttctttttt 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
