BAC Information

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BAC

Clone NameMSMg01-068J06
Chromosome3 (Build37)
Map Location 123,390,066 - 123,390,340
singlet/doubletsinglet
Overlap genenone
Upstream genePde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068J06.T7 (MSMg01no068_j06.b1)MSMg01-068J06.TJ (MSMg01no068_j06.g1)
ACCAG293040AG293041
length706706
length of high quality
(start - end)
279 (51 - 329)292 (83 - 374)
definitionCHROMAT_FILE: MSMg01no068_j06.b1 PHD_FILE: MSMg01no068_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:03 2005CHROMAT_FILE: MSMg01no068_j06.g1 PHD_FILE: MSMg01no068_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTGAATCCACTGCTAGCCAGGGGTGTACTTACATAGTTA
ATCTCTTAGTGACTCGATTTCCCTGTTGGACCTGGGAGTAGTACCTAGAT
GAAATGAGTTGAGTGAGTTTTTCTATGTGAAGAGTCTCAATAGTAATGGT
ATAAGATAAATAACTGTTAACTGTTATTTTAACTGCTGACAGCTCTAGAA
AATAATGCTACAACAAGTTAAGTGTTACTCTCTGATGGCTTTTCATAGGG
ATTTCTAAAATTCTGGACAAATGACCAGATAAAGGTCTCTGAGATCATCA
CAAGGGTGACGAAACTCATTCGTTATTCTCCCCCCCCCCCCCTGGGCACT
TTGTCATGGCAGAGTCAGGCCTGGAATCCAGGCTACATAAAAATTTATAT
GTTCTGTGATGATACAAAATGATTAACACTTGCCATATACTTATAATGAA
CTCCTTATCGTAGTCATTTAGTTATACCTGACGCCTATGATGCATTATGG
ATAATGATTAATCTGTTCTAGTATTATTTACCTCTTAATTATAGCTCTTC
ATGATTTAATAACATGTTTTGTGTGTGTGTTAGTGTTGTGGCGTTAGTGT
GTGTACTTTTTTTTTTTTTTCTTACTTATTTTTCTTTTAATTTATTTTTA
TTACTC
TTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTAGAAGGAGGGGGTAC
CAACCCACCCATAAAACCTTCTACCCCAAATTTGCCCTGTCTATAAGATG
TGCAGAAATAAAGATGGAGCAGAGATTGAGGGAATGGCCAACCAACTTGA
AACCCATCCCATGTGAGATGCCAGCCCCTGACACTATTAATGATCCTCTG
TTATGAATGCAGTAAGCCTTGGAGACAACAATTATATCAGGCAAATGAAA
GTTACTTTTACATCCTTGTTGTAACTATCAGTGCTGTTATTTGAAGAAAT
GACAAAAAGCTCTAGGTTTTATTATTTATTTACCACCTCACAATGCCCTA
ATAATTGTTCTACCATTCTGTAATGAACTAGACAGTCATTTCAAATATCT
CCTGTTCTTGTGTACAACTAAGCTAATGCTCCAATGATCAGGGCCATGTG
AAAACCTAGGTACCAGTTAAACAGCCATGTGACCACCCTATATAATGGTC
CTATCAAAAGCCTCTGTAATCAACCCGTTATAGATACTGAAACCTACAGA
ATAGCCGGTTTTCTGACTTTTCCAAACCCGTTGAAATCATGCCAATTATC
CTGCATCTTCTGGAGGAAAGGTTTGAGGAAACCTCGAACCTTAAAAAAGG
AAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_j06.b1 MSMg01no068_j06.b1 CHROMAT_FILE:
MSMg01no068_j06.b1 PHD_FILE: MSMg01no068_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:03 2005
         (279 letters)



>mm_chr3_123389862_123390540
          Length = 679

 Score =  516 bits (267), Expect = e-151
 Identities = 273/275 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgaatccactgctagccaggggtgtacttacatagttaatctcttagtgact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgaatccactgctagccaggggtgtacttacatagttaatctcttagtgact 264

                                                                       
Query: 65  cgatttccctgttggacctgggagtagtacctagatgaaatgagttgagtgagtttttct 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 cgatttccctgttggacatgggagtagtacctagatgaaatgagttgagtgagattttct 324

                                                                       
Query: 125 atgtgaagagtctcaatagtaatggtataagataaataactgttaactgttattttaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtgaagagtctcaatagtaatggtataagataaataactgttaactgttattttaact 384

                                                                       
Query: 185 gctgacagctctagaaaataatgctacaacaagttaagtgttactctctgatggcttttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctgacagctctagaaaataatgctacaacaagttaagtgttactctctgatggcttttc 444

                                              
Query: 245 atagggatttctaaaattctggacaaatgaccaga 279
           |||||||||||||||||||||||||||||||||||
Sbjct: 445 atagggatttctaaaattctggacaaatgaccaga 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)