BAC Information

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BAC

Clone NameMSMg01-068J22
Chromosome3 (Build37)
Map Location 75,372,423 - 75,372,746
singlet/doubletsinglet
Overlap geneSerpini1
Upstream geneLOC100041551, EG667459, BC050789, Serpini2, Wdr49, Pdcd10
Downstream geneGolph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068J22.T7 (MSMg01no068_j22.b1)MSMg01-068J22.TJ (MSMg01no068_j22.g1)
ACCAG293071AG293072
length731734
length of high quality
(start - end)
328 (44 - 371)299 (73 - 371)
definitionCHROMAT_FILE: MSMg01no068_j22.b1 PHD_FILE: MSMg01no068_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:06 2005CHROMAT_FILE: MSMg01no068_j22.g1 PHD_FILE: MSMg01no068_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTAAAAAAAACAA
AACAAACAAACAAACAAAAAAGAGAAACACTGGAAATTAAGTTAGAACTA
GAAAATCTGAAGACAAACTGGAAAAGCAAAGACATATAAACAAACTATCT
TAAGAAATAACCTAACACAACCAAGTAGAATTTAACCACGATTACTCTTG
ACTCCATATTGAGGCTGTCTCAAGCAATAAACAAAACAATAATAAATACC
CATAATACTTTCATAATCATAATTTTAGCAAGCTAGGATGATAATTTTCT
CAACTTCTTAATTTTATTTTGTACTTTACCATTACAAACCTTTTGAAATA
AATTAAAACACACACACACAAAACTAGCCAGAACAAAATAATATACAAGT
TGAGTAGAGGTACTGCAGTTAGAACTGTCATTTTAAAAGGAAGCTGTGAA
GCTCCACATTAATTTTATGTACTTACCCACCACTAAAAGAAAAAAACCAT
TTTCCATTGCTTGTATCCACTTTTCCCTTATTCTCTTAGATTTGCTTTTC
TTCATGTTATACTGTATATATAATGTGCATTTGTATACATATTACTGACT
AGATTCTACATGAGACAGAAAATGTCAAGTTTTTAAAAGAACAATTTATA
TAAACGCCTGTGTTAAGACTATATTAAGGAT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGCCATTCTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAAT
CAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
CGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATTCTTAACATGCCCCCCCTGGTAAGAAG
GACACATGCTCCACTATGTTCACAGCAGCATTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATTAGATACCATTTCCT
AAACACATGAAACTCATGAATAATGATGACTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_j22.b1 MSMg01no068_j22.b1 CHROMAT_FILE:
MSMg01no068_j22.b1 PHD_FILE: MSMg01no068_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:06 2005
         (328 letters)



>mm_chr3_75372220_75372947
          Length = 728

 Score =  611 bits (316), Expect = e-179
 Identities = 322/324 (99%), Gaps = 1/324 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacagccagggctatacagagaaaccctgtcttaaaa-aaaacaaaacaaa 63
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 gaattccaggacagccagggctatacagagaaaccctgtcttaaaacaaaacaaaacaaa 263

                                                                       
Query: 64  caaacaaacaaaaaagagaaacactggaaattaagttagaactagaaaatctgaagacaa 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaacaaacaaaaaagagaaacaatggaaattaagttagaactagaaaatctgaagacaa 323

                                                                       
Query: 124 actggaaaagcaaagacatataaacaaactatcttaagaaataacctaacacaaccaagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actggaaaagcaaagacatataaacaaactatcttaagaaataacctaacacaaccaagt 383

                                                                       
Query: 184 agaatttaaccacgattactcttgactccatattgaggctgtctcaagcaataaacaaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaatttaaccacgattactcttgactccatattgaggctgtctcaagcaataaacaaaa 443

                                                                       
Query: 244 caataataaatacccataatactttcataatcataattttagcaagctaggatgataatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caataataaatacccataatactttcataatcataattttagcaagctaggatgataatt 503

                                   
Query: 304 ttctcaacttcttaattttatttt 327
           ||||||||||||||||||||||||
Sbjct: 504 ttctcaacttcttaattttatttt 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)