Query= MSMg01no068_n01.b1 MSMg01no068_n01.b1 CHROMAT_FILE:
MSMg01no068_n01.b1 PHD_FILE: MSMg01no068_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:23 2005
(571 letters)
>mm_chr3_6728094_6729065
Length = 972
Score = 1050 bits (543), Expect = 0.0
Identities = 561/569 (98%), Gaps = 5/569 (0%)
Strand = Plus / Minus
Query: 6 gaattctttagcatat---ccaacatgcaaagtacctgaaatgggtatcaaatgataaca 62
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gaattctttagcatatata--aacatgcaaagtacctgaaatgggtatcaaatgataaca 715
Query: 63 ttattagaattccctcttggggtcagatgagctacacagctgcattaaaaatctgtgctt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ttattagaattccctcttggggtcagatgagctacacagctgcattaaaaatctgtgctt 655
Query: 123 gggtatagcttatgtagtctgaatttgtttcctgcttgtttctctttctatgaaagcaat 182
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gggtatagtttatgtagtctgaatttgtttcctgcttgtttctctttctatgaaagcaat 595
Query: 183 gcatatattaaatatcatataaagaacatttgaaataaagatgtgacagaacaggacatg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gcatatattaaatatcatataaagaacatttgaaataaagatgtgacagaacaggacatg 535
Query: 243 aattataaatcttacatagacagagctttatgaatgttgatagataaagcctagatcaat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aattataaatcttacatagacagagctttatgaatgttgatagataaagcctagatcaat 475
Query: 303 ttctccaaattttacaacctctaccaaccagacagaaaatttactgcaacatgtcctgtg 362
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 474 ttctccaaattttacaacctctaccaaccagacagaaaatttcctgcaacatgtcctgtg 415
Query: 363 attaggaaaacgaattcatgaaaccagtgtaccttttaacctttaatcaaatgaaataca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 attaggaaaacgaattcatgaaaccagtgtaccttttaacctttaatcaaatgaaataca 355
Query: 423 gttttatcaccatcttctaaagttaaataaccatcctgtactcacttagaacactgttac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gttttatcaccatcttctaaagttaaataaccatcctgtactcacttagaacactgttac 295
Query: 483 tgctgtgactttgtctctgcctctcttccaggttcatggttcaccattctcctcctataa 542
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tgctgtggctttgtctctgcctctcttccaggttcatggttcaccattctcctcctataa 235
Query: 543 ccctttttcaattagctctgatcacagga 571
|||||||||||||||||||||||||||||
Sbjct: 234 ccctttttcaattagctctgatcacagga 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space: 539682
Effective search space used: 539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_n01.g1 MSMg01no068_n01.g1 CHROMAT_FILE:
MSMg01no068_n01.g1 PHD_FILE: MSMg01no068_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:23 2005
(571 letters)
>mm_chr3_6590002_6590972
Length = 971
Score = 1089 bits (563), Expect = 0.0
Identities = 569/571 (99%)
Strand = Plus / Plus
Query: 1 tgttgtggacagagaggtgcaatttgaagcatatatctttctgaagcatgaacacgttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttgtggacagagaggtgcaatttgaagcatatatctttctgaagcatgaacacgttaa 260
Query: 61 cccagcccccagttgtcagtgtctttcattattttatgaagctgtggaaaaacagtctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagcccccagttgtcagtgtctttcattattttatgaagctgtggaaaaacagtctgt 320
Query: 121 gttggagcattctcctcctgaaatgctctgtacacagagaattcttaaggcaaagagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttggagcattctcctcctgaaatgctctgtacacagagaattcttaaggcaaagagaag 380
Query: 181 actagcttctatcaaaatggagaaatagctcatcttgtgattcacgactccttataggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actagcttctatcaaaatggagaaatagctcatcttgtgattcacgactccttataggga 440
Query: 241 tacagtttgggtgtcatttgagattttctgtgcgtaatctttttatccccacctttctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacagtttgggtgtcatttgagattttctgtgcgtaatctttttatccccacctttctct 500
Query: 301 tctacataagataaaactctagtaatgacccatcaaatgactcaaaaggcagtctacttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctacataagataaaactctagtaatgacccatcaaatgactcaaaaggcagtctacttc 560
Query: 361 taagtaagtaaaagtacaaaatttggtagtgtaagaaattctagaaagtctacaaagtag 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 taagtaagtaaaagtacaaaatttggtagtgtaagaagttctagaaagtctacaaagtag 620
Query: 421 gtgacaataagatttgcctcatgtttagtagctggtatggagattccgaaagtggcatac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgacaataagatttgcctcatgtttagtagctggtatggagattccgaaagtggcatac 680
Query: 481 agggaaacagctctagttcttgatatatggtgcagttacagttttaaagcttgcaggaac 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agggaaacagctctaattcttgatatatggtgcagttacagttttaaagcttgcaggaac 740
Query: 541 aactaatttaaattgattactctggaggaac 571
|||||||||||||||||||||||||||||||
Sbjct: 741 aactaatttaaattgattactctggaggaac 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
