BAC Information

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BAC

Clone NameMSMg01-069G05
Chromosome3 (Build37)
Map Location 63,565,231 - 63,565,514
singlet/doubletsinglet
Overlap genePlch1
Upstream geneLOC676984, LOC666967, Mme
Downstream geneLOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069G05.T7 (MSMg01no069_g05.b1)MSMg01-069G05.TJ (MSMg01no069_g05.g1)
ACCAG293657AG293658
length689692
length of high quality
(start - end)
70 (160 - 229)287 (68 - 354)
definitionCHROMAT_FILE: MSMg01no069_g05.b1 PHD_FILE: MSMg01no069_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:08 2005CHROMAT_FILE: MSMg01no069_g05.g1 PHD_FILE: MSMg01no069_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCAAACGAACTCCTATTTTNCTACTTGCNCGGAANNCNNNGAATTTCTT
NGAGCCGGAGGACAGAAGAAGAACNNAANNCCCAGGGGNACAGGCCTATT
TCTACCAGNAACANCNNCANAAGGGGNCCACGNCCAGNNCNTGGCTCCAG
GNCCNCGAAGGCGCTCCAGTCCACTCGCGCGCGCTCCAGNTCCGGATTTG
CCCTGAGCTGAGGGTTAAGAGGGAGGGTGTTTTTATGTGAGCATGAGGAT
TTGAATGACAAAGCAGGTTGTGGCGGCAGCGCTGGCCNTTACCTGTTTTG
CTACTGTTGAAACCGCAGGCCGGAGCGCAGAGGAGCCTTTTTTGTTTTTC
CCCCCCCGCCCCTGGAGGAATTGGGGATGGAGTCTCGCCTGGACACTACC
CCATCTATAAAAAAAAAATTAGGCCTAGCTGTTTTTTACATCTCAGAAGG
ATCCTTCTTCCGCGCGAAACACATAGTTGAATTGGTCTGCCCCCTTTCCC
TCTTGCCTAATACTTATTCAGACTTCCTATTTTCCCCCCATCTCATCGTC
CTTCCTAGTTCGTTTTAACCAACTCCTCTTCCTCCAACTTCTCCCTTCAT
CCCTACCCTCTACCTTCACCCTCCCTTCCCTTCTTCTTTTTTTTTTTTTT
TCCTTATACCTGCATCACCAGATTCTCTATAAATTCGAT
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGCAGAAAGCCAACCAAGATGCTCAGACAGCA
ACAGGGCCTGGAGCACGTACCAGGCTGAAGAGTTTAGGTGCTAAAGATGG
GAATCCTGGCTTAGAGAACATCATGGTTTTTTTTTTTGTGCAGGTGGATT
TTTAGAACTAATGCCAAGAGGAGGACCTGTTAAGAGGGCTCAGAGAAGCC
TATCTCAGGTTGTCAAGGGCTAATTTAACTGTTGCCCTGACCCTCATTCG
GGCTCAGTCTTTTGATAGAATGATCCTGAATAGAGGGACAGTGATTTTTC
TTCTTATTATCTGCCCCCCCCCCCTGGTAACACTGGAACTGCCAAACTTT
AGATTTGCCTCCCTAGTGATATGTCTGCAGATACCTATGGCTTCTCCGGA
CCTCTACCCTAAAGATGGCCGAATACGTTTTTTAATCCCTGAGTCTCAGG
ACATCTCATTTGTGCCGTTTTTCTCGACTTTCGCTTGAATGCCCTTACTG
TTGTCCTCTTTTCCTCATACTTCTACTTTATTCCCCAGCCCCCTCTTCCT
TCTTTAGGTCCCAAATTGCCATCGGGTTGCCTCCCCTCCCTCCCTCCTTT
ACCGATTTCTTTGCTATCCCCCTTCGCTCTTTTCTCCCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_g05.g1 MSMg01no069_g05.g1 CHROMAT_FILE:
MSMg01no069_g05.g1 PHD_FILE: MSMg01no069_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:08 2005
         (287 letters)



>mm_chr3_63565031_63565715
          Length = 685

 Score =  518 bits (268), Expect = e-151
 Identities = 281/286 (98%), Gaps = 2/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcagaaagccaaccaagatgctcagacagcaacagggcctggagcacgtaccaggctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ctgcagaaagccaaccaagatgctcagacagcaacagggcctggagcaggtaccaggctg 260

                                                                       
Query: 61  aagagtttaggtgctaaagatgggaatcctggcttagagaacatcatggttttttttttt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  
Sbjct: 261 aagagtttaggtgctaaagatgggaatcctggcttagagaacaccatggttttttttt-- 318

                                                                       
Query: 121 gtgcaggtggatttttagaactaatgccaagaggaggacctgttaagagggctcagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtgcaggtggatttttagaactaatgccaagaggaggacctgttaagagggctcagagaa 378

                                                                       
Query: 181 gcctatctcaggttgtcaagggctaatttaactgttgccctgaccctcattcgggctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcctatctcaggttgtcaagggctaatttaactgttgccctgaccctcattcgggctcag 438

                                                         
Query: 241 tcttttgatagaatgatcctgaatagagggacagtgatttttcttc 286
           |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcttttgaaagaatgatcctgaatagagggacagtgatttttcttc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 685
Length adjustment: 9
Effective length of query: 278
Effective length of database: 676
Effective search space:   187928
Effective search space used:   187928
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)