BAC Information

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BAC

Clone NameMSMg01-069M04
Chromosome3 (Build37)
Map Location 157,270,736 - 157,393,163
singlet/doubletdoublet
Overlap genePtger3
Upstream geneNegr1, LOC100041152, LOC668853, LOC546818, Zranb2
Downstream geneLOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069M04.T7 (MSMg01no069_m04.b1)MSMg01-069M04.TJ (MSMg01no069_m04.g1)
ACCAG293942AG293943
length703701
length of high quality
(start - end)
278 (44 - 321)217 (56 - 272)
definitionCHROMAT_FILE: MSMg01no069_m04.b1 PHD_FILE: MSMg01no069_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:36 2005CHROMAT_FILE: MSMg01no069_m04.g1 PHD_FILE: MSMg01no069_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,270,736 - 157,271,009)(157,392,947 - 157,393,163)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCTGATGACTTTCTGTCTAGTCTGTTACTTTGGGGGAGAGTGAAG
GAGGGTGGGATTAGGAGTTCTCACAGAACTCTTTCATGTCCCTCTTTCTC
AGTATTTCAGCAGTCAGCAGTACCAAGGCACTCCAAGCAAGCTCTCAAGG
TCAATTCATTGATCTTTAAGGTCACTCCCACAGAGCTCATTTATCCATGC
ACATGCATGCACAGGAAGAAGAATGCTTACATAAGATTACAGTCCGTTCT
TGAACTTGAAAGTATTAGAGTACCAGAAAACCACATGGAAAGACCAAATA
TAGAATATATTTGTTTTATATCCAGCATATCTGAAATATAGAAACACATG
CAAAATTAGCTAACATCTATGCTTTCAAATAAATTTATACTTCCTGTTAT
ATCTTACACTGTATAGACCATATGTCGTCAAACATATCGAGCTAATATTT
CTAATACAATGGACCCATTGACTGTCTTATAAAATACTCTTTTGGTGCAG
ATCCCATATGTTTTCCGGTTTTTTTATCGCCTTTCGCTGAGTTCCATGCC
ACTATTTTCCACTATGTAGCGATAGACTCTAATACCTTTTTCAATTGTAG
GTTTACTATTCATATGTAATGTTTTCCTTGTTCAGCCCGTTATCCCTTTT
ACT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXATGAGTCAGCTTTTCTTACTGCCCTATTTCCTTCTCTGAAGGGTG
AGATCGAAGAGATGAACATCTTCCATTGTGATAGATGTCAGCTTCTGCTC
AATGGTCCTCCATGCCTGCAGGAGCTCTGGGTGGGGGGAGTACCAGTTGC
TCTCCTGCAGAGTGTGTGCATCAATTTACCTCATGGTTGACAGAGCAGAA
CAGTTTTGTTTTAGGATGAACATGCCAATATGTAAAGGTCATAATTTGAC
CTCTGTGCTATTTGTTGCTCTAGCTAAAGCACAAAGGTCTATTTTTTTTG
TCGCCCCCCCCCCCACAGATGGCTTGCTCTTGTTGTCTTCATCCTCTGTT
GGCTTCAAATATAACAATAGAGGGGTGGGGGGGAGCGTTGCCTTTACAAT
GACTTTTCTTGTCACTATCACCTTTCACAATTTACGCTATATTTTAGATT
TACATCGTCCTTCCTAGTGTTTCCCTACATGTTTGTATGGTCCTTTTGCT
TCCTTCACTTTTGTTTTCTTTCTTAATTAACCCATCTTCGGTCGTACCTT
CACTCGTATATATTGTTATTGAAATCACGCTATGTCCGTACCCCTATACC
ATTGATTATTAATTTTTTATAATTACCTTCAATTTTTTTTTTTCCCTTTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_m04.b1 MSMg01no069_m04.b1 CHROMAT_FILE:
MSMg01no069_m04.b1 PHD_FILE: MSMg01no069_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:36 2005
         (278 letters)



>mm_chr3_157270532_157271209
          Length = 678

 Score =  499 bits (258), Expect = e-146
 Identities = 270/274 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctgatgactttctgtctagtctgttactttgggggagagtgaaggagggtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctgatgactttctgtctagtctgttactttgggggagagtgaaggagggtg 264

                                                                       
Query: 65  ggattaggagttctcacagaactctttcatgtccctctttctcagtatttcagcagtcag 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggattaggagttgtcacagaactctttcatgtccctctttctcagtatttcagcagtcag 324

                                                                       
Query: 125 cagtaccaaggcactccaagcaagctctcaaggtcaattcattgatctttaaggtcactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagtaccaaggcactccaagcaagctctcaaggtcaattcattgatctttaaggtcactc 384

                                                                       
Query: 185 ccacagagctcatttatccatgcacatgcatgcacaggaagaagaatgcttacataagat 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccacagagctcatttatccatgcgcatgcatgcacaggaagaagaatgcttacataagat 444

                                             
Query: 245 tacagtccgttcttgaacttgaaagtattagagt 278
           ||||||| ||||||||| ||||||||||||||||
Sbjct: 445 tacagtctgttcttgaatttgaaagtattagagt 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no069_m04.g1 MSMg01no069_m04.g1 CHROMAT_FILE:
MSMg01no069_m04.g1 PHD_FILE: MSMg01no069_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:36 2005
         (217 letters)



>mm_chr3_157392747_157393363
          Length = 617

 Score =  389 bits (201), Expect = e-113
 Identities = 213/217 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagtcagcttttcttactgccctatttccttctctgaagggtgagatcgaagagatga 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 417 atgagtcagcttttcttactgccctatttccttctctgaagggagagatcgaagagatga 358

                                                                       
Query: 61  acatcttccattgtgatagatgtcagcttctgctcaatggtcctccatgcctgcaggagc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 acatcttccattgtgctagatgtcagcttctgctcaatggtcctccatgcctgcaggagc 298

                                                                       
Query: 121 tctgggtggggggagtaccagttgctctcctgcagagtgtgtgcatcaatttacctcatg 180
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 297 tctgggtggggggagtaccagttgctcccctgcagagtgtgtgcatcaatttacctcagg 238

                                                
Query: 181 gttgacagagcagaacagttttgttttaggatgaaca 217
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gttgacagagcagaacagttttgttttaggatgaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)