Query= MSMg01no070_c03.b1 MSMg01no070_c03.b1 CHROMAT_FILE:
MSMg01no070_c03.b1 PHD_FILE: MSMg01no070_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:05 2005
(466 letters)
>mm_chr3_65702267_65703132
Length = 866
Score = 853 bits (441), Expect = 0.0
Identities = 459/465 (98%)
Strand = Plus / Minus
Query: 2 gaattcccagctgtggctctcacaagggatagtaagtacagcaaggctgagcaaaacatt 61
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaatccccagctgtggctctcacaagggatagtaagtacagcaaggctgagcaaaacatt 607
Query: 62 tccctgtagggacggcaatgctttgttacttgagtttctttttttctggggtcacagctg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tccctgtagggacggcaatgctttgttacttgagtttctttttttctggggtcacagctg 547
Query: 122 tctggctacttcttcccatcatactccgacttacacctttggccgacagggacacagcta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tctggctacttcttcccatcatactccgacttacacctttggccgacagggacacagcta 487
Query: 182 tactccctggtaaaagaaagcccttgtgggactgcatgtctcacccagggctgagtgagg 241
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 486 tactccctggtaaaagaaagcccttgtgggactgcatatctcacccagggctgagtgagg 427
Query: 242 ccagggccacaggtacctgccagctctctgactctgtgtccactgtggagtcttctaatc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccagggccacaggtacctgccagctctctgactctgtgtccactgtggagtcttctaatc 367
Query: 302 cctgtctcttccaggcatccattgtgaaaccctgccttctgaactcagagaatggtggct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cctgtctcttccaggcatccattgtgaaaccctgccttctgaactcagagaatggtggct 307
Query: 362 cacgaggcagttcacgtgaattatgcttcacttacagaccctgacaagtccaataaaggc 421
|| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 306 caggaggcagttcacgtgaattatgcttcacctacggaccctgacaagtccaataaaggc 247
Query: 422 aagggacctgtgtaaaacgaacaagtggctggagctgacctcagc 466
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 246 aagggacctgtgtaaaacgaacaagtagctggagctgacctcagc 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_c03.g1 MSMg01no070_c03.g1 CHROMAT_FILE:
MSMg01no070_c03.g1 PHD_FILE: MSMg01no070_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:05 2005
(462 letters)
>mm_chr3_65544360_65545222
Length = 863
Score = 785 bits (406), Expect = 0.0
Identities = 448/462 (96%), Gaps = 5/462 (1%)
Strand = Plus / Plus
Query: 1 tctcaagtcctgactcaccagtgctccagtgtttgtagg-agtcttgggttgcacctctt 59
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tctcaagtcctgactcaccagtgctccagtgtttgtaggcagtcttgggttgcacctctt 260
Query: 60 acccgctgcacatggggctgtggagaaggtgatatgcaagtatctccttaagcccttgtg 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 acccgctgcacatggggctgtggagaaggcgatatgcaagtatctccttaagcccttgtg 320
Query: 120 gattctctgatgagcacccagggaggccggccaggtcactcaggcagtactgttttgcta 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gattctctgatgagcacccagggaggccggccaggtcactcaagcagtactgttttgcta 380
Query: 180 gtgaccgtctcatgtgccattcccaacataatgctgccgggttgccatctctgcaccgtt 239
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 381 gtgaccgtctcatgtgccattcccaacataatgctgccgggttgctgtctcttcaccgtt 440
Query: 240 agcatcatttaatgttttgggtggtcatttgttatcttccatagggaattgtcttttgtg 299
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 agcatcatttaatgtttcgggtggtcatt-gttatcttccatagggaattgtcttttgtg 499
Query: 300 tcctttgcccattttcaatatgtatctattttatattttcactgttgaatct-tagaagt 358
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 500 tcctttgcccattttcaatatgtatctattttatattttcactgttgaat-tatagaagt 558
Query: 359 ttctcataaattgcacagcttattatgcatgtgacttttccatgacatacgttgccttcg 418
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 559 ttctcataaattgcacagcttattacgcatgtgacttttccatgacataagttgccttcg 618
Query: 419 caaacctatttatttgttttctttgaggcacagatttttttt 460
|||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 619 caaacctatttatt-gttttctttgagacacagatttttttt 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space: 385556
Effective search space used: 385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
