BAC Information

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BAC

Clone NameMSMg01-070D23
Chromosome3 (Build37)
Map Location 72,492,834 - 72,493,229
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070D23.T7 (MSMg01no070_d23.b1)MSMg01-070D23.TJ (MSMg01no070_d23.g1)
ACCAG294314AG294315
length762692
length of high quality
(start - end)
399 (102 - 500)467 (77 - 543)
definitionCHROMAT_FILE: MSMg01no070_d23.b1 PHD_FILE: MSMg01no070_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:14 2005CHROMAT_FILE: MSMg01no070_d23.g1 PHD_FILE: MSMg01no070_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNTTTNNNNNNNNTTTTTCCCNNNNCCNCCNNCCNTTCCCATCCT
CCTGCCTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAT
CCGCGGAATTCCTGGGGATTTCCGCAGCAGTGGTTCTAAGTGGCATCTCA
TTGTCATGCCCATCTATGTACTTACTCTTTGAACACAAAGCAGCTCCATC
GAACACTGAAGAGTCTGCTCACCACAGTGTCTTTGCAGGTGTTTCCATTG
AAAACTTTGCCGTTTGCATGCAAATTTCAATAAGATTACAAACAATTTCA
CTCCTTCAAATATTATTCTCCATCATATGTCTGTAATCATAAAAACTATT
TGTCAAATTCTATCATCTCATTAAATTCTAAAATCATTTTAATAATTTCA
AAGTGAATTCCAAATCTAATGTTGAAAGGTCATACAATTTCTGAATTTCT
GGATATACTTTGTTCTTTCTTATCTCCTAATTTTCACAGTTTTATTCAGG
TGTGAACAGAGCTACATCAGCTCAACTATCAGTTAGCTCATTCAAAATCA
TCCTTCCAATTGTACTTTTAATATCTCTTGCTGGCAGCTTCCCCTCATTT
TCTCTTACCCTGAGTCATAATATTAGGATAATATATTCAATAACCAATCA
GTCACTATATTTAAACAATAGGTGGTTGTGGAATTACGGAATCCCATCTT
TCTTCCTTTTGAAATAACTTAAAAAATATTACCAGCACTCTTGTCTTTGG
GAATTCTCATTT
NTCGATGATGNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTGGTAGACTTTTCCTTTGAT
GAGTATTTGATAGAAGATTCTGGGCTGGCATTTGTGTTCTCATAGGATCT
GTATAACATCTGCCCATGATCTTCTGGCTTTCATATTATCTGGTTAGAAG
TCTGGTATAATTTTGATAGTTCTGCCTTTATATGTTATATGTTTTTCCCT
TACTGCTTTTAATATTCTTTTTTTTGTGTGTGTGTGCATTTGGTGTTTTG
ACTATTATGTGACATGAGGAATTTCTTTTCTGATACAATCTATTTGGAGT
TCTGTAGGTTTCTTTTATGTTTATGGGAATCTCTTTATTTAGGAAATTTT
CTTCTATAATTTTGTTGAAGATATATAGTCCTTTAAGTTGTGAACATTCA
AACCATTCTATACTTATATTCCTTAGGTTTGGTCTTCTCATTGTGTCCTG
GATTTACTGGATAATTTGGGTTAGGAGCTTTTTGCATTTGTGTCAATGGT
TTCTATGGTATCTTCTGCCCCTGAGATTCTCTCTTCTATCTCTTGTATTC
TGGTGCTGATGCTTGCATCTATGACTTCTGATCTCTTTCCCAACGTTTTC
TATGCCCAGGTTTGTATCCCTTTGCGCATTCTTTAACGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_d23.b1 MSMg01no070_d23.b1 CHROMAT_FILE:
MSMg01no070_d23.b1 PHD_FILE: MSMg01no070_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:14 2005
         (399 letters)



>mm_chr3_72492631_72493429
          Length = 799

 Score =  706 bits (365), Expect = 0.0
 Identities = 389/397 (97%), Gaps = 2/397 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctggggatttccgcagcagtggttctaagtggcatctcattgtcatgcccatc 63
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 204 ggaattcctggggatttttacagcagtggttctaagtggcatctcattgtcatgcccat- 262

                                                                       
Query: 64  t-atgtacttactctttgaacacaaagcagctccatcgaacactgaagagtctgctcacc 122
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcatgtacttactctttgaacacaaagcagctccatcgaacactgaagagtctgctcacc 322

                                                                       
Query: 123 acagtgtctttgcaggtgtttccattgaaaactttgccgtttgcatgcaaatttcaataa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acagtgtctttgcaggtgtttccattgaaaactttgccgtttgcatgcaaatttcaataa 382

                                                                       
Query: 183 gattacaaacaatttcactccttcaaatattattctccatcatatgtctgtaatcataaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gattacaaacaatttcactccttcaaatattattctccatcatatgtctgtaatcataaa 442

                                                                       
Query: 243 aactatttgtcaaattctatcatctcattaaattctaaaatcattttaataatttcaaag 302
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 443 aactatttgtcaaattctatcacctcattaaattctaaaatcattttaataatttcaaag 502

                                                                       
Query: 303 tgaattccaaatctaatgttgaaaggtcatacaatttctgaatttctggatatactttgt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgaattccaaatctaatgttgaaaggtcatacaatttctgaatttctggatatactttgt 562

                                                
Query: 363 tctttcttatctcctaattttcacagttttattcagg 399
           |||| |||||||| |||||||||||||||||||||||
Sbjct: 563 tcttacttatctcgtaattttcacagttttattcagg 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)