BAC Information

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BAC

Clone NameMSMg01-070I15
Chromosome3 (Build37)
Map Location 130,538,769 - 130,672,373
singlet/doubletdoublet
Overlap geneLOC546811, LOC545568
Upstream geneCfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34
Downstream geneLef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070I15.T7 (MSMg01no070_i15.b1)MSMg01-070I15.TJ (MSMg01no070_i15.g1)
ACCAG294536AG294537
length663677
length of high quality
(start - end)
511 (50 - 560)408 (74 - 481)
definitionCHROMAT_FILE: MSMg01no070_i15.b1 PHD_FILE: MSMg01no070_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:39 2005CHROMAT_FILE: MSMg01no070_i15.g1 PHD_FILE: MSMg01no070_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,671,867 - 130,672,373)(130,538,769 - 130,539,176)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
GCCTCTCAGTTGGCCATGTGGTCTCTGAAGCAGCTTTCTGCTGGAGGGCT
TTCGCTTTCTTACCCACTCACAACTTCTTCCTGAACGCATTTCCCTCTCT
TAAATTCAAATCCCCTCACACTTAATCATACAGGAAACCTACTCATCTGC
TTATGAAATGTGTGTGTGCCCTACATGCAGATACAAGAGTGTACCACCAG
CCTATACAACCTTCTTTAGGTTTTAATGTTTGTGACTCTTCCTGTAAAGG
GATCCTTAGACTCTCAATGTAAACCAGGAAGTCCTCCCTCTCCCTCCTCT
CTTCAGGCTACACTCTTTTGCCAGTAAGACCAAATCTTAGAGTCTCTCTC
TAGCTGCATCACGGAATGATACTTGGGGCTATGCATTTCCTACAATGCAC
CGACTGTATTGAATGTGAACTTCCTCCAAAATTCTATCCTGCCTTTGGTC
TCAGACCTTGTGCTGCAGATGTTGACGTGGGTGTGCTTGCATCTCTGCTA
CTTACGAACTTCACACAATCCCTGACCTCTCTGGTTCATTGCATCCTCTT
CTGAAAAGCTTTCCCTACCCCCTTGTAAAGGTAAAATAAGACACGTGAAT
TATCATAGTGTGT
NCGATGCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCCAAATTGAACATGAGCACTCCCAT
GTGTTACCATTAATGTTGATTTGTTGTGTAGTCTCTGGTTACACAGGAAC
AAAGGCTTAAATAGAGCCTAGGATGAAACTGAAGAGTCTGTGGATCCCCT
GTCTCCTGTTTATGAGTCCTCGCTCTGTAACAGGTCCTTGGCATTTATTA
TTTGACTCGGTATTCATAGCAGTCTTGTAAGTTGGTATTGTCACATTCAC
CTAGCTAGTGAATGCCTATCTGACCACTCATTTCTCACTTACTGACTCTC
CGAGTGCTGCCCAGTCCAGGATTGTACCTGCATCCAACTCAGCTGCTAAA
ATCCCCATTGTCACCCATGTAGGTGATATAGTAAGGACTATTCTGCTACA
TTCTGAAGGCTTTTTCCTTCTTACAAACACGTGGGGCTGAGGGGAGTGGG
GAGCACAGTTGTTACTGACTGCGGACCTCCCAGCTTGGTGCCAGATCTGC
CTTGTTTTGTTGAAACCTGCATCTGGCTTCTTGATGCGGCTGCTTCGTGA
TGCCCCAGCTTTCTTCATTACCAGTCCCGGCGATGCTCTGGGCCTCCCTG
CCTCTTAGGCGTCTGCTGTTGGCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_i15.b1 MSMg01no070_i15.b1 CHROMAT_FILE:
MSMg01no070_i15.b1 PHD_FILE: MSMg01no070_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:39 2005
         (511 letters)



>mm_chr3_130671663_130672573
          Length = 911

 Score =  934 bits (483), Expect = 0.0
 Identities = 501/507 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   tctcagttggccatgtggtctctgaagcagctttctgctggagggctttcgctttcttac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tctcagttggccatgtggtctctgaagcagctttctgctggagggctttcgctttcttac 652

                                                                       
Query: 65  ccactcacaacttcttcctgaacgcatttccctctcttaaattcaaatcccctcacactt 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 651 ccactcacaacttcttcctgaatgcatttccctctcttaaattcaaatcccctcacactt 592

                                                                       
Query: 125 aatcatacaggaaacctactcatctgcttatgaaatgtgtgtgtgccctacatgcagata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aatcatacaggaaacctactcatctgcttatgaaatgtgtgtgtgccctacatgcagata 532

                                                                       
Query: 185 caagagtgtaccaccagcctatacaaccttctttaggttttaatgtttgtgactcttcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 caagagtgtaccaccagcctatacaaccttctttaggttttaatgtttgtgactcttcct 472

                                                                       
Query: 245 gtaaagggatccttagactctcaatgtaaaccaggaagtcctccctctccctcctctctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gtaaagggatccttagactctcaatgtaaaccaggaagtcctccctctccctcctctctt 412

                                                                       
Query: 305 caggctacactcttttgccagtaagaccaaatcttagagtctctctctagctgcatcacg 364
           |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 411 caggctacactcttatgccaggaagaccaaatcttagagtctctctctagctgcatcacg 352

                                                                       
Query: 365 gaatgatacttggggctatgcatttcctacaatgcaccgactgtattgaatgtgaacttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 351 gaatgatacttggggctatgcatttcctacaatgcaccgactgtattgagtgtgaacttc 292

                                                                       
Query: 425 ctccaaaattctatcctgcctttggtctcagaccttgtgctgcagatgttgacgtgggtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctccaaaattctatcctgcctttggtctcagaccttgtgctgcagatgttgacgtgggtg 232

                                      
Query: 485 tgcttgcatctctgctacttacgaact 511
            ||||||||||||||||||||| ||||
Sbjct: 231 cgcttgcatctctgctacttacaaact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no070_i15.g1 MSMg01no070_i15.g1 CHROMAT_FILE:
MSMg01no070_i15.g1 PHD_FILE: MSMg01no070_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:39 2005
         (408 letters)



>mm_chr3_130538569_130539376
          Length = 808

 Score =  774 bits (400), Expect = 0.0
 Identities = 406/408 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccaaattgaacatgagcactcccatgtgttaccattaatgttgatttgttgtgtagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccaaattgaacatgagcactcccatgtgttaccattaatgttgatttgttgtgtagtc 260

                                                                       
Query: 61  tctggttacacaggaacaaaggcttaaatagagcctaggatgaaactgaagagtctgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctggttacacaggaacaaaggcttaaatagagcctaggatgaaactgaagagtctgtgg 320

                                                                       
Query: 121 atcccctgtctcctgtttatgagtcctcgctctgtaacaggtccttggcatttattattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcccctgtctcctgtttatgagtcctcgctctgtaacaggtccttggcatttattattt 380

                                                                       
Query: 181 gactcggtattcatagcagtcttgtaagttggtattgtcacattcacctagctagtgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactcggtattcatagcagtcttgtaagttggtattgtcacattcacctagctagtgaat 440

                                                                       
Query: 241 gcctatctgaccactcatttctcacttactgactctccgagtgctgcccagtccaggatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctatctgaccactcatttctcacttactgactctccgagtgctgcccagtccaggatt 500

                                                                       
Query: 301 gtacctgcatccaactcagctgctaaaatccccattgtcacccatgtaggtgatatagta 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcacctgcatccaactcagctgctaaaatccccattgtcacccatgtaggtgatatagta 560

                                                           
Query: 361 aggactattctgctacattctgaaggctttttccttcttacaaacacg 408
           |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 aggactattctgctacattccgaaggctttttccttcttacaaacacg 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)