BAC Information

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BAC

Clone NameMSMg01-070L16
Chromosome3 (Build37)
Map Location 32,164,986 - 32,299,193
singlet/doubletdoublet
Overlap geneZmat3, 4930429B21Rik
Upstream geneSlc7a14, LOC625125, Kcnmb2, LOC665514
Downstream genePik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070L16.T7 (MSMg01no070_l16.b1)MSMg01-070L16.TJ (MSMg01no070_l16.g1)
ACCAG294681AG294682
length707714
length of high quality
(start - end)
338 (39 - 376)318 (67 - 384)
definitionCHROMAT_FILE: MSMg01no070_l16.b1 PHD_FILE: MSMg01no070_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:54 2005CHROMAT_FILE: MSMg01no070_l16.g1 PHD_FILE: MSMg01no070_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,164,986 - 32,165,320)(32,298,876 - 32,299,193)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTT
AAGTGCCCAAGTGGCTCTAAGGCAGGAGCCGGGCAAAGGGGCAGCACATT
AACCCTTTCAGGCCACTGGCTTTCCACTTCACTCCTTATTCACCACGGGT
TTTTGAATAAATAGTGGGTCGTGGGAGGCAAAGGGACAATTACCTTCATA
ATCTGGCTTTAAACAAAGTGAGACAGACAGACAGTGCTGAGCCAAACAGG
ATAACCATGATGTAACGAGGCTTTGAATAAAAAACAGACCAGAAAAATTC
ACATGCATATGAGCTGTCCTCTTAGGAGCCAATTTGCTTATTCTAAAAAT
CCTTCTAGTCACCTACAAGATATTAGAAGCTGCTACTGTTATAAGCTGGC
TACTTACCTACCCACTTGATACTAGTTATAGTTACTTGGTTAGAGTGACT
CTTAGCTGAGAAAAAGCCTCCATATCGTTTGCCTGTACCATGTGTATGTC
CTATAGCAGTTTCATAGCCATGTTGATGTTCCCGTTCTGATCTACCCTGT
ATATCATTATTAATATATCTATAGTCCAGTCTCTTACCTGTATATCTAAC
GGATGATATCGCCCATGTCACTGTCGGGTTTATTTCTGTTATTATCTATT
CGTCTCTTTTTCCGCGATTCTGTTTATCCACCTTCTCTTTTTTTTTTTAT
GCCTCCG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACATCCTGGTGGAGGACACAGACAAACAGATGAC
AATGCAGTGAGGAAATTTGGTTACAGTGGGGGACAAGATGCCATGGGAAC
AGGAAGCAGCAACACCTAACCCAAGCTGCACTTCTCAAAGGAGGCAGTCA
GCGAGCCAGGGAAGCGAGACTGAGAGGACCAGTGTTGCAGGAAGTGCAAG
AGGCATGTGCACAGGAGAGCAAGGGAAGGCCAGGGAGCTGCAGTATGGGA
GGGAAGGGTAACCAGGACCAAGGCAAGTCAGACTGGCTCTTCAGAGACAG
GGCTTCACAGCCCTGTCCATTAGATTTTCACAAACTTTATAACTACAACA
GAACCAGGTCTGGCTCCATGTCAGACAAAGTACATCAGCATCTATCACAA
TTGTAAAGCTGTTCTCTAGGATGATTGTGCAGTCTGGACTGAAAAGTACC
GGTTGAACTTGATAAATTCAGTCTAGGTGCCGCATGCTGGTGATCCTAGG
TTAAGTGGAAGCCATATGTACCCCAGCTTGCGGGCTCTATTCCCCTCTCG
CTGATGTCTGGTTCTTTTATAGCGATTATTAACTCTCATCTAGCCGTCTC
TCTAAATAACTTCTCTTTTTTTTTTTCACTCCACCATCCGGTTACCACTT
TTCTTTTTTACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_l16.b1 MSMg01no070_l16.b1 CHROMAT_FILE:
MSMg01no070_l16.b1 PHD_FILE: MSMg01no070_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:54 2005
         (338 letters)



>mm_chr3_32164783_32165520
          Length = 738

 Score =  609 bits (315), Expect = e-179
 Identities = 330/335 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccttaagtgcccaagtggctctaaggcaggagccgggcaaaggggcagcacatta 63
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 204 gaattccttaagtgcctaagtggctctaaggcaggaaccgggcaaaggggcagcacatta 263

                                                                       
Query: 64  accctttcaggccactggctttccacttcactccttattcaccacgggtttttgaataaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accctttcaggccactggctttccacttcactccttattcaccacgggtttttgaataaa 323

                                                                       
Query: 124 tagtgggtcgtgggaggcaaagggacaattaccttcataatctggctttaaacaaagtga 183
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagtgggtcgtgggaggtaaagggacaattaccttcataatctggctttaaacaaagtga 383

                                                                       
Query: 184 gacagacagacagtgctgagccaaacaggataaccatgatgtaacgaggctttgaataaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacagacagacagtgctgagccaaacaggataaccatgatgtaacgaggctttgaataaa 443

                                                                       
Query: 244 aaacagaccagaaaaattcacatgcatatgagctgtcctcttaggagccaatttgcttat 303
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 444 aaacagaccagaaaaattcacatgcaaatgagctgtcctcttaggagccaatttgcttat 503

                                              
Query: 304 tctaaaaatccttctagtcacctacaagatattag 338
           |||||||||||||||||||||||| ||||||||||
Sbjct: 504 tctaaaaatccttctagtcacctagaagatattag 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no070_l16.g1 MSMg01no070_l16.g1 CHROMAT_FILE:
MSMg01no070_l16.g1 PHD_FILE: MSMg01no070_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:54 2005
         (318 letters)



>mm_chr3_32298676_32299393
          Length = 718

 Score =  592 bits (306), Expect = e-173
 Identities = 315/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatcctggtggaggacacagacaaacagatgacaatgcagtgaggaaatttggttacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acatcctggtggaggacacagacaaacagatgacaatgcagtgaggaaatttggttacag 459

                                                                       
Query: 61  tgggggacaagatgccatgggaacaggaagcagcaacacctaacccaagctgcacttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgggggacaagatgccatgggaacaggaagcagcaacacctaacccaagctgcacttctc 399

                                                                       
Query: 121 aaaggaggcagtcagcgagccagggaagcgagactgagaggaccagtgttgcaggaagtg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 398 aaaggaggcagtcagcgagccagggaagcaagactgagaggaccagtgttgcaggaagtg 339

                                                                       
Query: 181 caagaggcatgtgcacaggagagcaagggaaggccagggagctgcagtatgggagggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 caagaggcatgtgcacaggagagcaagggaaggccagggagctgcagtatgggagggaag 279

                                                                       
Query: 241 ggtaaccaggaccaaggcaagtcagactggctcttcagagacagggcttcacagccctgt 300
           || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 278 gggaaccaggaccaaggcaagtcagactggctcttcagagacagggcttcacagtcctgt 219

                             
Query: 301 ccattagattttcacaaa 318
           ||||||||||||||||||
Sbjct: 218 ccattagattttcacaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)