BAC Information

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BAC

Clone NameMSMg01-071D24
Chromosome3 (Build37)
Map Location 124,475,280 - 124,475,396
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
Downstream geneLOC668820, Ndst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071D24.T7 (MSMg01no071_d24.b1)MSMg01-071D24.TJ (MSMg01no071_d24.g1)
ACCAG295080AG295081
length717708
length of high quality
(start - end)
95 (154 - 248)118 (174 - 291)
definitionCHROMAT_FILE: MSMg01no071_d24.b1 PHD_FILE: MSMg01no071_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:35 2005CHROMAT_FILE: MSMg01no071_d24.g1 PHD_FILE: MSMg01no071_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCGTAAACGACTACTATAATCCTAAATAGGCGGAATTCTCCAA
ACTATTCCCACTGAAAAGAAACTTGCCGTTCTGTCATTCAATGAATATAA
TTCCAACCAAGGTAATGCTTGCCTGAGAAAAGATAAGATTAACTAAACTT
ACTCTATTTTAATTTCTATTATGCAATGTATATTTGTAATAATGAAATAC
ATCTCTTTATAAATTAAATAAATGAACAAGATTATGGCTTGATATACCAT
AGTCTACCTTGAATCACAATACAATCTTAATTTCAACATGGAATCATAAC
GAAATGTGGACTGATCTCTTTGGTATTGCTTTCCCTTTGTATAGATTTGA
TATATGGCCTTGTCTCATGCAACGACCATATACATTTTGTCAGTATTATC
TAATATATTTCTCAATATTTACCACTTTTTTTCAAGTATGTTATCATTCC
AATATAACCTCTAAAACAACCATCCTTGCATTTGTGCCTTATATACCCTT
AAGATATTATACTTGTTTCCCAGTATTTCCTTGACAGTACACCATATATA
ATAGCTCAAATCATAAGTAACTTTATTATACTACGTTCTTACACACTACT
ATATTTTTCCAACCCGTTCACCACTTCTGAGGTTTTGATGAATTACTTTC
ATAACGGTGTCCTGCTTATTAGGACCTATTTTCTGGCCCCAATATTATTC
CTACATTCTTTTCAAGA
GTGATAGCCTGAGGACGCCTGGCTTCAAAACAGGTGACTATAGAAGGTTT
TCCTAATCTCTGATTTCTGAATCCCTGGGCCTTAGAATTTCCTTAGCTGC
TGTAAATCTTAGGAGCCTCTTCCCTTTTCAGGATGTAGTGAATTCATTCC
GAGGAAGGAGTTAAGTTGTTCTCTCTATGAAGAAATGTTGCAAATAATTA
TCCATGTGCTTTTGTGGCCTTTTTTTTTCTATCATAATTACACAACTCTT
TCCCTTTCCTTTTTCTCAAATCCTCTCATACAACCCTCTTTGCTCATAAT
CTAATTTTTGTTTCTCTCTTTTCATTATTTGAAGCTACACATATGTATGT
TGCATATGCGTATATATTTGTCAGTATATGTTATCGCCTATGCTGTATAT
GTATCGTTAAATATGTTCAAATGCCTTTGTATCCTTACACTTCTCACAAT
GTTTGTTATCACCTACATGTTTCTTGTCCGCCCGCCCTACATTTTGCCTT
TACTCACTTATGCTTTACACTCTCACATTCTTGTTTAGAATCGGAGGTCT
CAACGCAGTCTTTCCCTTTACCCACCATGTCAAGCCAATATCGCCACTTA
TCTGACTCACGCACAAATTCCTCTTCTTTTAGAGACCTTCCGGTTCTAGT
TTCCAGATTTTTATAGCCTCTATTACCTTTTGACCCAAATCCTCCGAATC
TCTCTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_d24.g1 MSMg01no071_d24.g1 CHROMAT_FILE:
MSMg01no071_d24.g1 PHD_FILE: MSMg01no071_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:35 2005
         (118 letters)



>mm_chr3_124475080_124475596
          Length = 517

 Score =  197 bits (102), Expect = 1e-55
 Identities = 114/118 (96%), Gaps = 1/118 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatgaagaaatgttgcaaataattatccatgtgcttttgtggcctttttttttctatc 60
           ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||
Sbjct: 201 tctatgaagaaatgttgcaaataattacccatgtgcttttgtgttctttttttttctatc 260

                                                                     
Query: 61  ataattacacaactctttccctttcctttttctcaaatcctctcatacaaccctcttt 118
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ataattacacaactctttccctttccttttt-tcaaatcctctcatacaaccctcttt 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 517
Length adjustment: 8
Effective length of query: 110
Effective length of database: 509
Effective search space:    55990
Effective search space used:    55990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)