BAC Information

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BAC

Clone NameMSMg01-071E20
Chromosome3 (Build37)
Map Location 159,286,365 - 159,286,498
singlet/doubletsinglet
Overlap geneRpe65
Upstream geneLOC100041008, LOC668905, LOC668907, Depdc1a
Downstream geneGpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071E20.T7 (MSMg01no071_e20.b1)MSMg01-071E20.TJ (MSMg01no071_e20.g1)
ACCAG295118AG295119
length706718
length of high quality
(start - end)
331 (67 - 397)133 (77 - 209)
definitionCHROMAT_FILE: MSMg01no071_e20.b1 PHD_FILE: MSMg01no071_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:39 2005CHROMAT_FILE: MSMg01no071_e20.g1 PHD_FILE: MSMg01no071_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTGAAATTCCTACGGAAATGGATGGACCTGGAGGGCATCATCCTGATTGA
GGTAACCCAATCACAAAGGAACTTACACAATATGTACTCACTGATAAGTG
AATATTAGCCCAGAAACTTAGAATACCCAAGATATAAGATACAATTTGCT
AATCACATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTCCC
CCTTGTTAGAATTGGGAACAAAACACCCAAGGAAGGAGTTACAGAGATAA
AGTTTGGAGCTGTGACGAAAGGATGGACCATCTAGAGACTGCCATATCTG
GGGATCCATCCCATAATCAGCTTCCATATGCTGACACCATTGCATACACC
AGCAAGATTTTGCTGACAGGACCCAGATATAGCTGTCACTTGTGAGACTA
TGCCGGGGCCTAGCATACACAGAAGTGGATGCTCACAGTCAGCTATTGGA
TGGATCATACGGCCCCCAGTGTAGTAGCTAGAGAAAGTATCTAAGGAGCT
ATAGGTATCTGCCTCCCTATAGGTGTAACCTTCTTATGATCTAACCTTAT
ACCCGGAGTTTTTGACTTCTTGGGGTTAATTTACCGAAATTCCGGCCTTA
GTGTTCTTCTCTGGAAAGAGATGCCCTTTGGATTTGTAAGTTATAACTTT
CCCAGC
CCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCCTTTCTTCAGAAACTATATTT
TTGAATAAGCAGATGGAGTTCTAAGAAGGGAAATAAAATATTATAGCAGA
TCAATGAATGTGCATGTCTGGGATTCTAGTTCTCATTTGTTTGTTTTATT
AAGTTGAGGCTAAACAAGAACCAGAGCCACAGCATATAATAAAGCAACTG
CATTACATAGCATCAGTCTTGATTAAGCATTGCTGCTAGGAAGCCTAGAA
AGCTAGATCAGTGCTTAATAGTACTGCCTGCTGATGTTGAAGACAGGGTT
CAACTCCCAGCACCCACATTATAGCTCACAACCAGCTGTACCTTTCAGCT
TCAGGTGACTCAGAACCTTCTTCTGGCCTCTGTGGACACCAGAAATATAT
ATGCTACACAGGTACTTATGCAAACCAAATGACCATATTCATATTAATAT
TATATTATTTTTAATAACTTAATGCACAGACTGGTCTTTGTTTTTATTTC
TTGTAGGTTTAAAAGTTTGTAAATATTGGAAAACCTTTAATATTGATCAA
TAATCTTCGTGGGCTATTTTTACATATCGGTTTAATATTCACCCCACACA
TCTGGAACACGATTCACCTTAGGTTTTCCTTATGCTTGTATCATCCCAAT
ACTTATCTTCCCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_e20.g1 MSMg01no071_e20.g1 CHROMAT_FILE:
MSMg01no071_e20.g1 PHD_FILE: MSMg01no071_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:39 2005
         (133 letters)



>mm_chr3_159286165_159286698
          Length = 534

 Score =  244 bits (126), Expect = 2e-69
 Identities = 132/134 (98%), Gaps = 1/134 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcctttcttcag-aaactatatttttgaataagcagatggagttctaagaagggaaata 59
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctttcttcagcaaactatatttttgaataagcagatggagttctaagaagggaaata 260

                                                                       
Query: 60  aaatattatagcagatcaatgaatgtgcatgtctgggattctagttctcatttgtttgtt 119
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 aaatattatagcagatcaatgaatgtgcatgtctgggactctagttctcatttgtttgtt 320

                         
Query: 120 ttattaagttgagg 133
           ||||||||||||||
Sbjct: 321 ttattaagttgagg 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 534
Length adjustment: 8
Effective length of query: 125
Effective length of database: 526
Effective search space:    65750
Effective search space used:    65750
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)