Query= MSMg01no071_n23.b1 MSMg01no071_n23.b1 CHROMAT_FILE:
MSMg01no071_n23.b1 PHD_FILE: MSMg01no071_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:25 2005
(579 letters)
>mm_chr3_4521304_4522282
Length = 979
Score = 1064 bits (550), Expect = 0.0
Identities = 571/578 (98%), Gaps = 2/578 (0%)
Strand = Plus / Plus
Query: 3 ggaattcaggaacatataccactacaaagcaagtaccaaagatcctaagtcaacgaaaca 62
||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcagaaacatatacaaatacaaagcaagtaccaaagatcctaagtcaacgaaaca 262
Query: 63 aaggaccattttggaaagcatatagaagtttcaaaaaattaagtgcagggcatcaatatt 122
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 263 aaggaccattttggaaagcatatagaagtttcaaaaagttaagtgcagggcatcaatatt 322
Query: 123 tgtggaaaaagtaagataattctgagagggggattatataataatgaatgtattagaaga 182
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 323 tgtggaaaaagtaagataattctgagagggg-attatataataatgaatgtattagaaga 381
Query: 183 aaagcccaaatctggaaaaacagcaccaaaatcaacccaaatcaataatctgaaagatat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaagcccaaatctggaaaaacagcaccaaaatcaacccaaatcaataatctgaaagatat 441
Query: 243 tgcagagaagagaacaaatttgtttaagtgaataacctagcttcagtagagaaaatctca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgcagagaagagaacaaatttgtttaagtgaataacctagcttcagtagagaaaatctca 501
Query: 303 aaataaacagccttttttgtgttattaacaaaattgttgaagacctattaatatgagtga 362
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaataaatagccttttttgtgttattaacaaaattgttgaagacctattaatatgagtga 561
Query: 363 agaaaataaaagtgttaggcaaaggtaacaaaactcagtaatagattttatttctggctt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agaaaataaaagtgttaggcaaaggtaacaaaactcagtaatagattttatttctggctt 621
Query: 423 gcaaacatgtaaaggaaaggatggaaactgtgcaaatatatttatatatcatgcagacat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gcaaacatgtaaaggaaaggatggaaactgtgcaaatatatttatatatcatgcagacat 681
Query: 483 gtgcacatgtgtgtatgtgtgtatttgaaatcttgaaataaatgggacacacactttaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gtgcacatgtgtgtatgtgtgtatttgaaatcttgaaataaatgggacacacactttaaa 741
Query: 543 tcatcaaaactgtatacaacaagattcaaaaa-ttcaa 579
|||||||||||||||||||||||||||||||| |||||
Sbjct: 742 tcatcaaaactgtatacaacaagattcaaaaaattcaa 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no071_n23.g1 MSMg01no071_n23.g1 CHROMAT_FILE:
MSMg01no071_n23.g1 PHD_FILE: MSMg01no071_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:25 2005
(551 letters)
>mm_chr3_4682860_4683810
Length = 951
Score = 884 bits (457), Expect = 0.0
Identities = 460/461 (99%)
Strand = Plus / Minus
Query: 1 atttagtgttgctcatatccacttgtgtttggtactaaccatttggaattggacaactta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 atttagtgttgctcatatccacttgtgtttggtactaaccatttggaattggacaactta 402
Query: 61 ttaagacatcttatccttgcagaagactgaatataacttccacaactatgaattgatttg 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttaagacaacttatccttgcagaagactgaatataacttccacaactatgaattgatttg 342
Query: 121 catctaaatgtgtggacttgggatatttctcaattcccaaacatgccaattatctgagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 catctaaatgtgtggacttgggatatttctcaattcccaaacatgccaattatctgagct 282
Query: 181 tgtcaattgatgccattatatgagtatcttttaaatgaccatatgtttatattttcataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgtcaattgatgccattatatgagtatcttttaaatgaccatatgtttatattttcataa 222
Query: 241 atactgcttcactattttatatagaacaaactatctcatggaaagtgttttgattttttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atactgcttcactattttatatagaacaaactatctcatggaaagtgttttgattttttg 162
Query: 301 gctgttaaaatatctacaactcttcttctactatgttcctggaatcttaggtataggaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 gctgttaaaatatctacaactcttcttctactatgttcctggaatcttaggtataggaat 102
Query: 361 tatgttgtagatatatcaaatgaggtgggaaaatgcatgttcaattgttctgtgcttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 tatgttgtagatatatcaaatgaggtgggaaaatgcatgttcaattgttctgtgcttttt 42
Query: 421 gaacagttgtgaatttctgtaatggtcttctagtcttatag 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 gaacagttgtgaatttctgtaatggtcttctagtcttatag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
