BAC Information

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BAC

Clone NameMSMg01-072D14
Chromosome3 (Build37)
Map Location 75,837,403 - 75,837,646
singlet/doubletsinglet
Overlap genenone
Upstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1, Golph4
Downstream geneFstl5, LOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072D14.T7 (MSMg01no072_d14.b1)MSMg01-072D14.TJ (MSMg01no072_d14.g1)
ACCAG295820AG295821
length727732
length of high quality
(start - end)
245 (73 - 317)364 (72 - 435)
definitionCHROMAT_FILE: MSMg01no072_d14.b1 PHD_FILE: MSMg01no072_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:53 2005CHROMAT_FILE: MSMg01no072_d14.g1 PHD_FILE: MSMg01no072_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGGCGGAATT
CACTAAAAATCCCCAAAAACTTGTATAAACCAGAGAATAAGAGAAAGTAA
TAGATTCATAAAAAATGCCTTAGATTCAAATTTGCATTACAATAAACCCA
GGAAACAAGGGGAGCTGAAATAAAGTCTTTAACACATCAGATCAAACACC
ATCTCAGAGAGATCAATATGAGCAAACCACTCATTAGTAGCAGCAATGTC
CTTGGGTAAACAGCTTTAAATAAAACTATGAAGGGACTCAAAAAGCAAAG
CAAGGAAAGCTCAGCCTCNNCTTGATTAGATCGCTATGATACAAACTTTC
CACTGGTAAAAAGGGGTACATGAGTCTAAAGTGTCCTTTGCTCCTATGTG
AAAACTTTATTAACAGTTAAAACATCCTCCATTTTCCAAATTCTCATTTC
AGAGAGTTAATAGATATTTGGTTATAGTTTCATCTTTTTCTTAAGCATTT
TCTTAACATACAGCTTGCATAAGATATAACTCACCCATTCTAATTTTACA
GTTAAGTGGATCTGAATGTGTATCCAGAACTATGGGATATTGTCCACTCC
AAAAATTAAATTCTGTCTGTATAGCAGTTTATTGAAACATGGGGCTTTCT
CATCCTGGTTCTGATCTGTAAGCTGTATCTCTTACTGACCAGATTCCATA
GTTTTGGAAGGTGCTTGTGCTTGCTAG
ATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAAAAAAAGACCCTAATCAAATATCGAA
GATTCTTTAAAATTATTTTGACTAAAATTCTTCAGTCCTGCAGTAAATTA
ATGTGCTGAAGGTGGTCCATACCAGGGGGCTCACTCTCCTCAGAGGAGGC
AAGAAAGGGTAATTGGGGAAAAATTTGTAAGAGGAGGTAGTGGGAGGATG
GGGGCCTTATATTTGGGTACAAGAAGCATAAATAAATTTTGAAAAAAATT
AAAAATAATGCCTTAATATCACTAGCATTATAATGTTTTTGAAAGTTAGA
TTCTTCTCTCAGAAATTCTCTGTTTAGTTCTGTACTGCACTTTTAAATTT
GTTTGTTTGATTTGCTATTGTCGAATTTTTAGGTTTATTGTAAGTTTTGG
AAATCATCCCTCTGACAGATGAAGGATTGGTTAATATCTTTTCCTATTTG
GTAGCCTACTGTTTGGCCCTTCTGACTGTCATTTGCCTTACAGAAGTTTT
TTCTGTTATATGAGGTCCTATTTATTCATTGCTGATCTTACTGGCTGAGC
TATTGTTCAACAAGGTTTTCCCTGTGCCATTGTTGTTCTCGGCTATTATC
CTCTTTTCTCTTTTATCTTTTCTACTGTCCCCCTATTATAAGATGTAGGT
ACTCTGATGAATTTTGTACTTGAGTTCTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_d14.b1 MSMg01no072_d14.b1 CHROMAT_FILE:
MSMg01no072_d14.b1 PHD_FILE: MSMg01no072_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:53 2005
         (245 letters)



>mm_chr3_75837203_75837846
          Length = 644

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtataaaccagagaataagagaaagtaatagattcataaaaaatgccttagattcaaatt 60
           ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 201 gtataaaccagagaataagagaaagtaatagattcat-aaaaatgtcttagattcaaatt 259

                                                                       
Query: 61  tgcattacaataaacccaggaaacaaggggagctgaaataaagtctttaacacatcagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgcattacaataaacccaggaaacaaggggagctgaaataaagtctttaacacatcagat 319

                                                                       
Query: 121 caaacaccatctcagagagatcaatatgagcaaaccactcattagtagcagcaatgtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caaacaccatctcagagagatcaatatgagcaaaccactcattagtagcagcaatgtcct 379

                                                                       
Query: 181 tgggtaaacagctttaaataaaactatgaagggactcaaaaagcaaagcaaggaaagctc 240
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 380 tgggtaaacagctttaaataaaacgatgaagggcctcaaaaagcaaagcaaggaaagctc 439

                
Query: 241 agcct 245
           |||||
Sbjct: 440 agcct 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space:   149860
Effective search space used:   149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)