Query= MSMg01no072_j13.b1 MSMg01no072_j13.b1 CHROMAT_FILE:
MSMg01no072_j13.b1 PHD_FILE: MSMg01no072_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:23 2005
(594 letters)
>mm_chr3_9895642_9896634
Length = 993
Score = 443 bits (229), Expect = e-128
Identities = 250/257 (97%), Gaps = 3/257 (1%)
Strand = Plus / Minus
Query: 7 gaattctctattgcacttacgttgaaagtgtatagaatcagagggcaaggctgtatgatg 66
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaattctctattgcacttaggttgaaagtgtatagaatcagagggcaaggctgtatgatg 405
Query: 67 tctgccactttctggacagtggcacaaaggaaatgtctgagacgacttt-cgcccaaaag 125
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 404 tctgccactttctggacagtggcacaaaggaaatgtctgagacga-tttccgcccaaaag 346
Query: 126 gcctataacttctctggtggagggcatacaggagacagccaccagtgcatgcccacacgc 185
|| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 345 gcgga-aacttctctggtggagggcgtacaggagacagccaccagtgcatgcccacacgc 287
Query: 186 tgtggcctcagagtgcaatggcagatctgagaagaggaaatgcataaacccaatcctcga 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgtggcctcagagtgcaatggcagatctgagaagaggaaatgcataaacccaatcctcga 227
Query: 246 tgccccccagagggccg 262
|||||||||||||||||
Sbjct: 226 tgccccccagagggccg 210
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 993
Length adjustment: 10
Effective length of query: 584
Effective length of database: 983
Effective search space: 574072
Effective search space used: 574072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_j13.g1 MSMg01no072_j13.g1 CHROMAT_FILE:
MSMg01no072_j13.g1 PHD_FILE: MSMg01no072_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:23 2005
(304 letters)
>mm_chr3_9716078_9716781
Length = 704
Score = 543 bits (281), Expect = e-159
Identities = 295/301 (98%), Gaps = 3/301 (0%)
Strand = Plus / Plus
Query: 1 caaaggcagtctttgcatgttcacagggtggaaaggcccaccgcccacgtgtgtgcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaggcagtctttgcatgttcacagggtggaaaggcccaccgcccacgtgtgtgcagcc 260
Query: 61 tcccagcagggtcagctgccctctggggatgggctagcttccaaggacaggagatgtcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tcccagcagggtcagctgccctctggggatgggctagcttccaaggacaggaggtgtcag 320
Query: 121 catagatgggaagaaaaagtgcttctgttttatatttaagaccagagattaaaaatgtaa 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagatgggaagaaaacgtgcttctgttttatatttaagaccagagattaaaaatgtaa 380
Query: 181 cagcatcttaagtgggggtggcaggagttctgaagatctcagggaagcatgtgttactgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcatcttaagtgggggtggcaggagttctgaagatctcagggaagcatgtgttactgg 440
Query: 241 tcgccagtcacatcacctggggaagaaaatggaggccagggtggggcgggg---ggtggg 297
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 441 tcgccagtcacatcacctggggaagaaaatggaggccagggtggggtggggtggggtggg 500
Query: 298 g 298
|
Sbjct: 501 g 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space: 205025
Effective search space used: 205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
