CACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGCTTGATGACAGGTTCCCTGAATGAAACAGTTCTACCCTCTT
CCTGAAGGACAGTGGCTTACCCACAGCAAGAGATCAGAGCTAAAGATCCA
GAGAAGTCTCAAAGACTGCGGAGTACCCCCCCTTCTGTGCCCGAGTCTCT
GGCTTGTCACATCGGAACTACGCACAAAGAGGCAACATAGCCAGCATGTG
ACAAGCAGCTATCAGCATCAGGAAACAATGCTACACAGGAGAATGAGAAG
TGTCTAAGGACATTATGGATTGACGTGGAGTTGTCTTGATTCTAATAGGT
TAGATTTTATTTAACTGTCAGTGCTATTTGCCAGCCAGCGACTGTCCAGA
AAGTATTTGGGGGAGGCACTGTACTCCTTAGTACTTTCTGTCTATTGTTT
TGTTGTAATATAATACCTTGTAGCCCAGGATAGGCTAGGAAGTGCTAGCT
GGTGATGACCTTGCTCTCCTGATCAGACTGCTTCCCCCTCCCAAGTGCTG
AGACAAGTGTGTGCCGCCCACTGCTCCTTAGGTTTAGTAGAAAGCTGACT
GAAATACTCCAGCATGATATGGATAATTTATACACTTAAGGTAGATTACA
GAAACATGGTGGTGGGTGTTCTGGCCGGTGTCCACGCCGTGAGAAACAAT
G

NNNTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTAT
CATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGA
TGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTG
ATGGATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTAC
TTGGTCAGGATGGATGATTGCTTTAATGTGATCTTGGATTCGGTTAGCGA
GAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTG
AAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAAT
AGTGGCTTCAGTAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTG
TGAGAAGGTTGGTGCAGAACTGGAATTAGATCTGCTTTGAAGGTCTGATA
GAACTCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGAC
TATTTATAACTGCTTCTGTTTCTTTACGGGATATGGGACTGTTTAGAAGG
TCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCGGTCCAGAAATTT
GTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGA
AGGA

Query= MSMg01no072_n04.b1 MSMg01no072_n04.b1 CHROMAT_FILE:
MSMg01no072_n04.b1 PHD_FILE: MSMg01no072_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:41 2005
         (612 letters)



>mm_chr3_136556230_136557243
          Length = 1014

 Score = 1096 bits (567), Expect = 0.0
 Identities = 591/599 (98%), Gaps = 2/599 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgcttgatg-acaggttccctgaatg-aaacagttctaccctcttcctgaagg 61
           |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 599 ggaattctgcttgatgaaaaggttccctgaatgaaaacagttctaccctcttcctgaagg 540

                                                                       
Query: 62  acagtggcttacccacagcaagagatcagagctaaagatccagagaagtctcaaagactg 121
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 accgtggcttacccacagcaagagatcagagctaaagatccagagaagtctcaaagactg 480

                                                                       
Query: 122 cggagtacccccccttctgtgcccgagtctctggcttgtcacatcggaactacgcacaaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cggagtacccccccttctgtgcccgagtctctggcttgtcacatcggaactacgcacaaa 420

                                                                       
Query: 182 gaggcaacatagccagcatgtgacaagcagctatcagcatcaggaaacaatgctacacag 241
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaggcgacatagccagcatgtgagaagcagctatcagcatcaggaaacaatgctacacag 360

                                                                       
Query: 242 gagaatgagaagtgtctaaggacattatggattgacgtggagttgtcttgattctaatag 301
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 359 gagaatgagaagtgtctaaggacattatggattgacgtggagttgccttgattctaatag 300

                                                                       
Query: 302 gttagattttatttaactgtcagtgctatttgccagccagcgactgtccagaaagtattt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gttagattttatttaactgtcagtgctatttgccagccagcgactgtccagaaagtattt 240

                                                                       
Query: 362 gggggaggcactgtactccttagtactttctgtctattgttttgttgtaatataatacct 421
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gggggaggcactgtactccttggtactttctgtctattgttttgttgtaatataatacct 180

                                                                       
Query: 422 tgtagcccaggataggctaggaagtgctagctggtgatgaccttgctctcctgatcagac 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tgtagcccaggataggctaggaagtgctagctggtgatgaccttgctctcctgatcagac 120

                                                                       
Query: 482 tgcttccccctcccaagtgctgagacaagtgtgtgccgcccactgctccttaggtttagt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tgcttccccctcccaagtgctgagacaagtgtgtgccgcccactgctccttaggtttagt 60

                                                                      
Query: 542 agaaagctgactgaaatactccagcatgatatggataatttatacacttaaggtagatt 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  agaaagctgactgaaatactccagcatgatatggataatttatacacttaaggtagatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1014
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1004
Effective search space:   604408
Effective search space used:   604408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)