BAC Information

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BAC

Clone NameMSMg01-072N15
Chromosome3 (Build37)
Map Location 118,536,038 - 118,536,544
singlet/doubletsinglet
Overlap geneDpyd
Upstream geneSnx7, LOC100043260
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072N15.T7 (MSMg01no072_n15.b1)MSMg01-072N15.TJ (MSMg01no072_n15.g1)
ACCAG296292AG296293
length1,089709
length of high quality
(start - end)		---507 (71 - 577)
definitionCHROMAT_FILE: MSMg01no072_n15.b1 PHD_FILE: MSMg01no072_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:44 2005CHROMAT_FILE: MSMg01no072_n15.g1 PHD_FILE: MSMg01no072_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTTTTTTTCCCCTCTCCCCATACCCTCTCTCTTTTTCACTTTTTAAC
TTTTCACTTCTTCCTTTTTTTATATATTCCCGCCCGTTAATACGTGCTGC
TTACCCGTCTAAGAGAATCACGGGAAAAAATTTCGCCTTGCCTTCTGTTA
TTGGTTCTATCTAATGTCCTTTCTTACATAACACATATGCCCCGCTCGCA
GTCGTGGACCCAGTGGTGTCTTATTACCTTACAGAACATATCCCACACTC
CGTCATGGCCGACGGTTGGGTATCCCCAAAACTCACTGTCTGTTCCACAT
AAATTCCGGACGTCGGACTTTTCATTCGCTCTTCGCGCTTTCGTTTCCCT
CCTGTGACGCCAAATGTATATAGAAAACGCCCCAAACTTAACGCACATAA
CCCCCCTATAATACGCCGATTTTAACGTTTACGCGAACTTTAAAGCGCTT
TTACGGCTGTAGCACCCTGCAAATACTGCGAGGTGGGAGATGTATGAGAA
AGGGGTGTTGACGGGCATATAACGGACGTAGAGGGGCCCGCCATACGACG
GGAGATACACTGAAGAGCGGCGCACAAGGTCGGATTTTCGGGGTGTGTGT
GCCAAGGTCTGGTAAATCGTAGACGCTCACATTGGCGGGCAGGAGTATTG
TCAAACGATGTGTGATATTCTCGGTATTAAACTTGAGCTTAAACATTCAG
TTTACAATTGCGTGTACCCGGATGGCTTACTGATCGAATTTGTATTTGCG
CGTTGCATGAAACAAATCATTGTTCAATTCTCCGACAACCGCACACTCGT
AATTACTTCCTTAGTAAACTCTGCGTCCAAAACTTACCGGCCCACTAAAA
GAAATGGTGGTAAAAAGCTGGGGAAGGTGGCGGTATAAAGGAAAAGAGCG
GCCCTTAGCCGTCGGAATAAAACGCCGCCCGAAAAAACCGCACCAAAACG
GGTCGAATATAAGGCTTTTCAGCCTTTATTCACCCTCCCTGATCCTCGTT
TTTAACGCGATTCAATGTGCGACCGGGATAAACGTTCTTATATCATATAC
GGATACCGTGCGACGTCTACCTTGAGCTCGTGTAAATCN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTATTGCTTTGTCCTCAATTTAATCAAAC
TTGGTTTCTAAAACGCCAAATAAATGTGGTCATAAGAGCCATCTAAAATT
AGGTCCATAATAACAAATACATAAGGTAAGCTGATTCTGTGAATGTATGC
AAAACATCAAATTTCTAGAACACATATGCAGATTGTGTGTGTATGTCTGT
GTCTATGTTTACACACACACATATGTGTGTATTTAATTTGGTTTCAGCTA
TTAAAATCATTTCAAAGCACAAGCAAAGGCTATTTATCTACTTGCTCTAA
GTTTTAATTACACAAAAAAAAGTGGGACAAAGTTAGAATCAACTGTAAAA
ATATCTCATTTTTTTCTTCTGAAAAGGAATATTCTGTAGCCGGGCAGTGG
TGGCACACACCTTTAAACCCAGCACTTGTCAGGCAGACGCAGGCGGATTT
CTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGG
GCTGTACAGAGAGACCCTGTCTCGACNAATTTTATTAATCCCCACACAGA
GGAATATTCTGTAAAAGATATTCTTGTAGTATAAGGGGTTACAGATCACC
ACATAGATTGCAAGTCACCAAGTCATCCTGTAAACATCCTATAACTTACC
AAAAGATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_n15.g1 MSMg01no072_n15.g1 CHROMAT_FILE:
MSMg01no072_n15.g1 PHD_FILE: MSMg01no072_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:44 2005
         (507 letters)



>mm_chr3_118535977_118536884
          Length = 908

 Score =  965 bits (499), Expect = 0.0
 Identities = 505/507 (99%), Gaps = 1/507 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttattgctttgtcctcaatttaatcaaacttggtttctaaaacgccaaataaatgtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cttattgctttgtcctcaatttaatcaaacttggtttctaaaacgccaaataaatgtggt 509

                                                                       
Query: 61  cataagagccatctaaaattaggtccataataacaaatacataaggtaagctgattctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cataagagccatctaaaattaggtccataataacaaatacataaggtaagctgattctgt 449

                                                                       
Query: 121 gaatgtatgcaaaacatcaaatttctagaacacatatgcagattgtgtgtgtatgtctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaatgtatgcaaaacatcaaatttctagaacacatatgcagattgtgtgtgtatgtctgt 389

                                                                       
Query: 181 gtctatgtttacacacacacatatgtgtgtatttaatttggtttcagctattaaaatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gtctatgtttacacacacacatatgtgtgtatttaatttggtttcagctattaaaatcat 329

                                                                       
Query: 241 ttcaaagcacaagcaaaggctatttatctacttgctctaagttttaattacacaaaaa-a 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 328 ttcaaagcacaagcaaaggctatttatctacttgctctaagttttaattacacaaaaaga 269

                                                                       
Query: 300 aagtgggacaaagttagaatcaactgtaaaaatatctcatttttttcttctgaaaaggaa 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 268 aagtgggacaaagttagaatcaactgtaaaaatatctcatttttttcttctgtaaaggaa 209

                                                                       
Query: 360 tattctgtagccgggcagtggtggcacacacctttaaacccagcacttgtcaggcagacg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tattctgtagccgggcagtggtggcacacacctttaaacccagcacttgtcaggcagacg 149

                                                                       
Query: 420 caggcggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 caggcggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccag 89

                                      
Query: 480 ggctgtacagagagaccctgtctcgac 506
           |||||||||||||||||||||||||||
Sbjct: 88  ggctgtacagagagaccctgtctcgac 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 908
Length adjustment: 10
Effective length of query: 497
Effective length of database: 898
Effective search space:   446306
Effective search space used:   446306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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