Query= MSMg01no072_p07.b1 MSMg01no072_p07.b1 CHROMAT_FILE:
MSMg01no072_p07.b1 PHD_FILE: MSMg01no072_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:52 2005
(653 letters)
>mm_chr3_55264292_55265344
Length = 1053
Score = 1114 bits (576), Expect = 0.0
Identities = 636/662 (96%), Gaps = 13/662 (1%)
Strand = Plus / Plus
Query: 5 gaattctttcgggcatcagtggcactcccttgaccaacagctcctggggaagactctacc 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 192 gaattctttcgggcatcagtggcactcccttgaccaacagctcctggggaagactctatc 251
Query: 65 agcagtacttttgtagcttccggaaggagcactctcccctcccatgacccttttatctta 124
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 252 agcagtacttttgtagcttccggaaggagcactctcccctcccatgacctttttatctta 311
Query: 125 gctccttaaaaattatattttaattaacctataaaacaggtttccatatgatttttttca 184
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 312 gctcgttaaaaattatattttaattaacctataaaacaggtttccatatgatttatttca 371
Query: 185 cacgtccttagagatgtttatccctccctgtaagctctctcaaatccttccgcactgtaa 244
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 372 cacgtccttagtgatgtttatccctccctgtaagctctctcaaatccttctgcactgtaa 431
Query: 245 actttctccctcttggatccactccc-accccctttcgtggtctactcccttctttcttc 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 432 actttctccctcttggatccactccccaccccctttcgtggtctactcccttctttcttc 491
Query: 304 ctttaaacatagtatctggtcatatcagggacatagtgaaatatttactcagtgaaaatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctttaaacatagtatctggtcatatcagggacatagtgaaatatttactcagtgaaaatg 551
Query: 364 agaagcactttatctctcagttagtcttgctttaagatgtgtctaatatctttccagctt 423
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agaagcactttatgtctcagttagtcttgctttaagatgtgtctaatatctttccagctt 611
Query: 424 cacaggtgaaaatatttacatggtacctggcatctgagacatacac--acacacacacac 481
||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||
Sbjct: 612 cacaggtgaaaatatttacttggtgcctggcatctgagacatacacccacacacacacac 671
Query: 482 a-a---------acacacacatctgcattcttcattgtgcacacagaatctaaggtcatt 531
| | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 672 acacacacacacacacacacacctgcattcttcattgtgcacacagaatctaaggtcatt 731
Query: 532 tataagcaatgaattagtgggcgctttgatgataatttaataaaaggtgccctttagcca 591
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tagaagcaatgaattagtgggcgctttgatgataatttaataaaaggtgccctttagcca 791
Query: 592 accactaggtgcagcaactcttcccttggtaggtatggattctgcatctacaacagtgct 651
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 792 accactaggtgcagcaactcttctcttggtaggtatggattctgcatctacaacaatgct 851
Query: 652 ga 653
||
Sbjct: 852 ga 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_p07.g1 MSMg01no072_p07.g1 CHROMAT_FILE:
MSMg01no072_p07.g1 PHD_FILE: MSMg01no072_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:52 2005
(509 letters)
>mm_chr3_55325720_55326628
Length = 909
Score = 845 bits (437), Expect = 0.0
Identities = 483/507 (95%), Gaps = 14/507 (2%)
Strand = Plus / Minus
Query: 1 ataagctggttaaacaaagtcacacttcccatcgacccccttgctcaagcagagaagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ataagctggttaaacaaagtcacacttcccatcgacccccttgctcaagcagagaagcca 772
Query: 61 actaaagaatctgacagttacaaaattcagaaagtaaattcatgcaggagctagtacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 actaaagaatctgacagttacaaaattcagaaagtaaattcatgcaggagctagtacata 712
Query: 121 gagggagccggggggtgcgagggggaagggaacggtaaaacagaaacaaaatgaaaaggt 180
|||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 711 gagg--------------gagggggaagggaacggtaaaacagaaacaaaacgaaaaggt 666
Query: 181 ggagaacttgaaaacacaagcttaccgacacacacaatgcattctgtagcccgctgtatt 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 665 ggagaacttgaaaacacaagcttactgacacacacaatgcattctgtagcccgctgtatt 606
Query: 241 gggaggtttttctactgctaaggtgtaaatgcattgtctcaccgtctgagaaggttaagg 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggaggcatttctactgctaaggtgtaaatgcattgtctcaccgtctgagaaggttaagg 546
Query: 301 ctgggctgggtgactttaaaatgacagtatatacttctatagaacacaccctgaagtgct 360
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 545 ctgggctgggtaactttaaaatgacagtatatacttctatagaacacacactgaagtgct 486
Query: 361 gctgtagttccatttaccacagggcacgagagcactggaaacgtcattgctgcaatcagc 420
|||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 485 gctgtagttccatttattacagggcaggagagcactggaaacatcattgctgcaatcagc 426
Query: 421 aacaacaggcaaaggctttggcatcagcacggaatatactgtccttttaaccgtaagggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aacaacaggcaaaggctttggcatcagcacggaatatactgtccttttaaccgtaagggg 366
Query: 481 aaatcgatactgagcatgtgcgatgga 507
|||||||||||||||||||||||||||
Sbjct: 365 aaatcgatactgagcatgtgcgatgga 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
