XXXXXXXXXXXXXXXXXXXXXXXXXCTATNAGTTCGAGAATCCGCGGAAT
TCTTAAAAATCCATTCGAATCTTATTTTCATATGTCTGCTGAGCGACCAC
TGAATAGCACCAAAATAAGAAGATAGCAAAAATTGGTTCCTTTAATGACT
GAAGACAACTGCTGTTTGAAGATGAGCTCTTGTCAGAAGAAATAATTTTA
AGGAGGGAAAACCCAACCTGTAGTTGGCAGAAGAGTGTCAACAGATTTCG
CGTCAGAGTCCAGGTGTTGGGCACACAAAATCACCGGGCTATGAATACAG
CCCATTGTATGGAAATGCTGTGTAGCCTGAAAAAAAGATAAAAGTGAGGG
AAGGCATGGATATAAAAAGCTCTTTGCAAACAGCAACATGCTTTGTTACT
GTGACTTGATATTATAGCTTCCCTTGTGGTTCCCTTCCCCATAGTTAGAC
ACTACTAGAGGCCCCTTGACTCCCACCAGCCTCTGTTTTAATGATCTTTA
AGCCGTATTCCTAAAGGCAGGATGCGGTACTTGGCAGGAAAAAAGCTTAA
TAATTTGTTTGTGGTAAAATGCTATCCTAATTAGTGGATCTCATTAATTT
CAATAAGGCTAGCGCTAGCTTCCCTTCCCTACAGTAAGTCAGTCACCATG
TCCTGCTGACTCTCCTAGGGGATCTGTCTCTTACTGTTTGCTTTGTCCCC
TCGAATACTGTCAGATTTGTGACCTCC

TAATTTGGTANNCCTGNCNNCCNCCTGGCCTTCCAATTTANNTGACCTAT
ANAANGATCCCCCCAATTCTCTGCTTGTNNNTGNNCCTGNCTGNCTGCCC
ANAACTATGCTAAATGNNTTGTGTTTTCTGCCTANNTNTTNNNTGNCNNC
TTGCCNNCCCTCNNAAACTTCCANNTNAATCACNATNANAAANNAACCAC
AAACNTGGCTGTTTCTAACCCCCCTTCCCCCCCTCTCTTCCCTTTTCNAA
CNNAAAATTTTCTNAAAANAANTTTCTCCNTNCCAATNNCCCCTCCTCCC
TTCTCCNAACTCTNAANNNNNACCCCTTNNTTNTTTTNTTTTNNNNNNNT
CCCCTAAACTTTTNNNNNTTNNNNNNNCCCCTNTCTTTCTTTTTTTTAAA
NAANTNNTTTTTNTCTCTTTCTTTTCTCCTNNAGAGACTAGAGGGAAGAA
CTAAGAGGTGGGGGGGGGGGNNNNNNNNTTNNTTTCACAAAAAAAAAAAT
AATAAAAAATAATAAAAGAGAAAAGAAAGGAGGAAGAGAAAGAAAGAGAA
GGAGGAGAAAGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTCTCTNC
TNCCCCCCCCTCTTCTATCTGGGGGGGGGGGGGGGGGGTCTTCNTCGAAA
AACAAATGGGGAGGAAAGATANNNNNNNNNNNNNNNNNNNNNNNNCNCCT
TCNNCNCCTCNCCNNCNCCNCTCNCTTCCCTCTCTTCCCCCCCCCCCGGC
CTGTGTNNTCTTTTTCTCCTTCCTTTTCCCCCCTCTTTTTCCCCTTTNNN
NNNNNCNNCNTTTCTCTTTCTCTCTCTTTCTTTATCTCTATG

Query= MSMg01no072_p22.b1 MSMg01no072_p22.b1 CHROMAT_FILE:
MSMg01no072_p22.b1 PHD_FILE: MSMg01no072_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:55 2005
         (648 letters)



>mm_chr3_66361588_66362634
          Length = 1047

 Score = 1180 bits (610), Expect = 0.0
 Identities = 637/646 (98%), Gaps = 3/646 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcttaaaaatcc-attcgaatcttattttcatatgtctgctgagcgaccactgaat 62
           |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 847 gaattcttaaaaatccaatt-gaatcttattttcatatgtctgctgagcgatcactgaat 789

                                                                       
Query: 63  agcaccaaaataagaagatagcaaaaattggttcctttaatgactgaagacaactgctgt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 agcaccaaaataagaagatagcaaaaattggttcctttaatgactgaagacaactgctgt 729

                                                                       
Query: 123 ttgaagatgagctcttgtcagaagaaataattttaaggagggaaaacccaacctgtagtt 182
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 728 ttgaagatgagctcttgtcagaagaaataattttaaggaggggaaacccaacctgtagtt 669

                                                                       
Query: 183 ggcagaagagtgtcaacagatttcgcgtcagagtccaggtgttgggcacacaaaatcacc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ggcagaagagtgtcaacagatttcgcgtcagagtccaggtgttgggcacacaaaatcacc 609

                                                                       
Query: 243 gggctatgaatacagcccattgtatggaaatgctgtgtagcctgaaaaaaagataaaagt 302
           ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 608 gggctatgaatacagcccattgtatggaaatgccgtgtagcctg-aaaaaagataaaagt 550

                                                                       
Query: 303 gagggaaggcatggatataaaaagctctttgcaaacagcaacatgctttgttactgtgac 362
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gagggaaggcacggatataaaaagctctttgcaaacagcaacatgctttgttactgtgac 490

                                                                       
Query: 363 ttgatattatagcttcccttgtggttcccttccccatagttagacactactagaggcccc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttgatattatagcttcccttgtggttcccttccccatagttagacactactagaggcccc 430

                                                                       
Query: 423 ttgactcccaccagcctctgttttaatgatctttaagccgtattcctaaaggcaggatgc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 429 ttgactcccaccagcctctgttttaatgatctttaagccgtattcctaaaggcaggacgc 370

                                                                       
Query: 483 ggtacttggcaggaaaaaagcttaataatttgtttgtggtaaaatgctatcctaattagt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggtacttggcaggaaaaaagcttaataatttgtttgtggtaaaatgctatcctaattagt 310

                                                                       
Query: 543 ggatctcattaatttcaataaggctagcgctagcttcccttccctacagtaagtcagtca 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggatctcattaatttcaataaggctagcgctagcttcccttccctacagtaagtcagtca 250

                                                         
Query: 603 ccatgtcctgctgactctcctaggggatctgtctcttactgtttgc 648
           |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 249 ccatgtcctgctgactttcctaggggatctgtctcttactgtttgc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space:   661606
Effective search space used:   661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)