BAC Information

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BAC

Clone NameMSMg01-073C06
Chromosome3 (Build37)
Map Location 40,748,302 - 40,748,559
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
Downstream geneLarp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073C06.T7 (MSMg01no073_c06.b1)MSMg01-073C06.TJ (MSMg01no073_c06.g1)
ACCAG296513AG296514
length701705
length of high quality
(start - end)
71 (224 - 294)258 (76 - 333)
definitionCHROMAT_FILE: MSMg01no073_c06.b1 PHD_FILE: MSMg01no073_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:07 2005CHROMAT_FILE: MSMg01no073_c06.g1 PHD_FILE: MSMg01no073_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCATXXXXXXXXXXXXXXXXXXXXXXXCTATCTAAGAGGACCGCGGA
TTCTTGTCAGCCCACTTTTGATGACATTGGCTTGCCTTATAATGAGTAAC
TTCTTTTTGCTTCGATTGCAAATTTGATTTCATGCTAGCACATTTTCATA
TCCATAAAAATACTATAAGTTTTTCTTCAACCGCACTTCAAATATTCCTT
TAACTACTTTTGCTCTTAATGTATTTAAGAAGTTACGAAGAAGCTCACTT
TCTTAATAGCTTCTTTATAAGGTATATAATAATGTTATATATAGTAAATA
CTGTTAAACATAGTAAACTAGTTATTGTGGAAGAAATTTGCATATCTGTC
ATCTCGAGATAATTACATATTTCTCTCATTTATCAAGAACAGCTACAATC
CACTGATTTAAATAGACTTCCAAATACAACAAATGAATGTTTATAACTGA
CTTTTTCTGTTGTCTAAAAATGTGCTATTATAGAGTTGGGCATGGTGTTT
ATGCCTTTAATCCCAGCATCTGGGAGGTGGAGGCAGTCCATCTCTTGTGT
TCATTACCAGCATAATCTACACAGTAAATCCCTGGACAGGCATGTCTACC
ATTATTGACCCGTACTTTTAAGCCTGCACTTCCCAAATGTTATTTATATT
CAGCACGTTAATCTACCGCTTTCCAATTCGTCTTTTTTACTATTTTCTCT
A
CTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTAAATTCCCCGGAAAAACTATGA
ACTCCTAATCATCTGACCTGTAGTTCCCAAGTGCTGGAATTACAGGCCTG
TGTCATCACACTCAGTTAATATCCTTGGTGAATGGTAACCACTTTCTAGT
CCTTACAAGTTAAGAGACTTGATTGTCATTCCCTTCCATACTAGTTCTGT
GAGAGCCAAAGTTATGTTGTAAGTTTTACTATGCCTAAGAGGTCTGTCTT
AGGGTTTTACTGCTGTGAACAGACACTATGTATGGCCAATGTAAGTCTTA
AAAGGACAATATTTAATTGGGGCTGGCTTACAGGCTCAGAGGTTCAGTCC
ATTATCATCAAGGCCTGATCATGGTATCATCCAGGCAGGTGTGGTGTACG
CAGATCTGATAGTTCTACATCTTCATCCGATTGCTCCCTGTTAGTCATGA
CGAGGTTCTTACTTCCCTCACTCTCTGTGACATGTCTACTCCCATAGGGC
TTTGTCTTCTTACAGTGCCACTCCTTGTGCCAAGCTTATACACTTCTTCA
CATTAGTCATTGTATTACATATCCCTTATCTTGAATATCTTTTGCCCTTT
TACCGATAATTCCTGCATTACTGCTCTGTATCGTTTTTTGGACATTATAC
CCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_c06.g1 MSMg01no073_c06.g1 CHROMAT_FILE:
MSMg01no073_c06.g1 PHD_FILE: MSMg01no073_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:07 2005
         (258 letters)



>mm_chr3_40748045_40748702
          Length = 658

 Score =  476 bits (246), Expect = e-139
 Identities = 255/258 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaattccccggaaaaactatgaactcctaatcatctgacctgtagttcccaagtgct 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tttaaattccccgggaaaactatgaactcctaatcatctgacctgtagttcccaagtgct 456

                                                                       
Query: 61  ggaattacaggcctgtgtcatcacactcagttaatatccttggtgaatggtaaccacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaattacaggcctgtgtcatcacactcagttaatatccttggtgaatggtaaccacttt 396

                                                                       
Query: 121 ctagtccttacaagttaagagacttgattgtcattcccttccatactagttctgtgagag 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctagtccttacaagttaagagacatgattgtcattcccttccatactagttctgtgagag 336

                                                                       
Query: 181 ccaaagttatgttgtaagttttactatgcctaagaggtctgtcttagggttttactgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 335 ccaaagttatgttgtaagttttactatgcctaagaggtctgtcttagggttttactgcta 276

                             
Query: 241 tgaacagacactatgtat 258
           ||||||||||||||||||
Sbjct: 275 tgaacagacactatgtat 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)