BAC Information

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BAC

Clone NameMSMg01-073E19
Chromosome3 (Build37)
Map Location 36,508,316 - 36,508,629
singlet/doubletsinglet
Overlap geneBbs7
Upstream geneLOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2
Downstream geneTrpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073E19.T7 (MSMg01no073_e19.b1)MSMg01-073E19.TJ (MSMg01no073_e19.g1)
ACCAG296632AG296633
length732728
length of high quality
(start - end)
321 (36 - 356)522 (72 - 593)
definitionCHROMAT_FILE: MSMg01no073_e19.b1 PHD_FILE: MSMg01no073_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:19 2005CHROMAT_FILE: MSMg01no073_e19.g1 PHD_FILE: MSMg01no073_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTATACGACTCCTATAGTTCGAGGATCCGCGGAATTCTT
ATACACCACAAATTGGCCTCAAATTTGTGACAACCCTCTACTTCAGTCTC
CCAAGTATGGGGATTACAGACAAGAACCACCACATTCAGGGACCAGACAC
CCTTTTGATATAATATCGTTACCTCAAAACCAGAACTACCACAGGCACTT
GAGGAATAGGAACCTGTGTATCTAGGTTGTTCTTTTTTTAACTTTTTACA
TATACCTTGTCATTACCATAATCATAACTGAGCCAGACAGTGAAAACTGA
ATGTATACAACTTCACACTTCTTTATAACTAGCAGAGAGGTTTTAGAATG
TTCCCTTTTTATACTGTCCGAGGCGATCACCATGCTAATTCCTCCAATCT
GACATCACATATCATATATACATATAAAAAAACCTCTGTGATGGATGGAT
GCACACAATTACTATATATCTATGGAAAATATAAAATATATTTTAAAAAA
TGATCTCTATACAAAAAGTGAATGTGATTGCATAGATACTCACATACACA
CGTACCCGCATATACTCACCTCTAAAGACCCATACACTCTCTCAACTCTC
TCTTTTACCTACACATAATTCCCTTTACTCTTATTCTCTATATCCACTGT
TTCTTCCTATGCGATTTTTTAAAACATTTCATCCTGTAACCTTTTGTGTA
TTAGTTCCCGTTCTCTCGAACACTGGATCGCC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATGCACAGGCTGTACTGAGATGTAAGAA
GTGGAGAATAATCCAAGTAAGTTTATCGTCATGCTAGAAGATGCTCTGCA
GGAGGAGGGAGGGACTCATTAATATCACCCAGCTACAAACCTCATGATGC
ACAATAGTGACCTAACTGTAAGCGACTGCAGCAATGGTGGAAAAGATCTT
ACGGGAGTAGCCAACCACTTTGTTTTTAATTGCATTTGAGGTCCGCTCCA
AGAGATACTTGACACTGCTAAAGTGTCTAAGAACCTGAGACTAGAAAGGT
GATGGGCCTCGAGGAACTCCCACCACTATCGTTCTGCTAAAGGAAATAGC
AATGAAATGATTCCTAATGACATTCTGTATGTCTGTATCCCATGTGTATG
CCTTGATCAGCTCTCATTGGAGAAGTTTCTGTTTGTGGTAGATAGTAACT
GACGGGAAAACACACAGCTGAGTGTGAGAGTGAGAGAGAAACTTTGGAGC
ACTCAACCCTAAATGGGATGACTTCATCAGACTCCTCTCCTCAAGGCTCA
TGGATCTATGTGGGAGAGGAGGCAGAGAGACTGTGAGAGGTTATATGACA
ATCCTGTCACTGGCCACAGAGTTGATGTTACTTGACATCTGTGAGTCTGC
AAACTGGGTTTCGGATTCGGGCTTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_e19.b1 MSMg01no073_e19.b1 CHROMAT_FILE:
MSMg01no073_e19.b1 PHD_FILE: MSMg01no073_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:19 2005
         (321 letters)



>mm_chr3_36508110_36508830
          Length = 721

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattc-ttatacaccacaaattggcctcaaatttgtgacaaccctctacttcagtctcc 66
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcattatacaccacaaattggcctcaaatttgtgacaaccctctacttcagtctcc 266

                                                                       
Query: 67  caagtatggggattacagacaagaaccaccacattcagggaccagacacccttttgatat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caagtatggggattacagacaagaaccaccacattcagggaccagacacccttttgatat 326

                                                                       
Query: 127 aatatcgttacctcaaaaccagaactaccacaggcacttgaggaataggaacctgtgtat 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aatatcgttacctcaaaaccagaactaccacaggcacttgaggaataggaacctgtgtat 386

                                                                       
Query: 187 ctaggttgttctttttttaactttttacatataccttgtcattaccataatcataactga 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctaggttgttctttttttaactttttacatataccttgtcattaccataatcataactga 446

                                                                       
Query: 247 gccagacagtgaaaactgaatgtatacaacttcacacttctttataactagcagagaggt 306
            |||||||||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 447 accagacagtgaaaactgaatgtatacaacttcacacttcaaaataactagcagagaggt 506

                         
Query: 307 tttagaatgttccc 320
           ||||||||||||||
Sbjct: 507 tttagaatgttccc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)